Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0659
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 1.3
07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393... 29 2.9
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 28 6.7
04_01_0357 + 4667796-4667901,4668722-4668816 28 6.7
07_01_0975 + 8223269-8224354 28 8.9
07_01_0683 - 5145539-5145601,5146113-5146146,5146549-5146650,514... 28 8.9
07_01_0446 - 3371829-3372132,3374691-3375673 28 8.9
07_01_0445 - 3365244-3366227 28 8.9
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 8.9
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612... 28 8.9
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 261 WNMRE-VRLVTAATGSMGPADGALLLSPSRKHFL 163
W R VR V A + S+GP D + L P KHFL
Sbjct: 839 WVKRSAVRFVVACSESIGPVDTFVYLFPHLKHFL 872
>07_01_0532 -
3935661-3935720,3936314-3936412,3937804-3937908,
3939474-3939666,3940434-3940513,3940607-3940904,
3941139-3941431
Length = 375
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 218 LPVAAVTRRTSRMFH-IPTHHQ 280
+P+A V R+TSR H +PT HQ
Sbjct: 277 MPIATVNRKTSRAIHSVPTWHQ 298
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 548 TIEQTNCHSISTQPRQSRSFCFERVQLYNGN 456
T++ CHSI T ++ C E V LYN N
Sbjct: 891 TVDIIGCHSIKTLTWINQLPCLEEVYLYNCN 921
>04_01_0357 + 4667796-4667901,4668722-4668816
Length = 66
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 214 HAAGSGGD*THLAHV 258
HAAGSGGD H+ HV
Sbjct: 29 HAAGSGGDLGHMGHV 43
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 234 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 73
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>07_01_0683 -
5145539-5145601,5146113-5146146,5146549-5146650,
5147398-5147658,5148729-5148832,5148999-5149246,
5149360-5149420,5149507-5149682,5149787-5149844,
5150804-5150908,5150995-5151228
Length = 481
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -2
Query: 715 GSASLXTR*GRRXSNVLLLHGHRCXS--SAGRDRSRLGQSLPHSAGITSLHNRLTVPS 548
GS+ L R N L+H HR +AG S + + +P+ G +HNRL++PS
Sbjct: 366 GSSVLGVGGRRMMINGGLVHSHRSLEDFNAGDAFSSMKRRVPN--GPDPIHNRLSIPS 421
>07_01_0446 - 3371829-3372132,3374691-3375673
Length = 428
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 54 NFYSMCMAVKLEIPSVVTLMEFRLDSAEYCQAQHK 158
NF++ C+ + E+P+VV ++RL A H+
Sbjct: 101 NFHAGCLRLAAELPAVVLSFDYRLAPEHRLPAAHE 135
>07_01_0445 - 3365244-3366227
Length = 327
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 30 GCSRLPPFNFYSMCMAVKLEIPSVVTLMEFRL 125
G R P NF++ C+ + E+P+VV ++RL
Sbjct: 90 GSGRWP--NFHAWCLRLAAELPAVVLSFDYRL 119
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 119 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 229
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>03_05_0435 -
24259864-24260206,24260302-24260467,24261175-24261241,
24261553-24261648,24261718-24261898,24262252-24262323,
24262393-24262505,24262596-24262817,24263262-24263910,
24264118-24264206,24265932-24266015,24266219-24266358,
24266522-24266573
Length = 757
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 586 GITSLHNRLTVPSQSNRQTVTLFPHN-HDSLVAFVLKGSNYIMGTARIDVVFN 431
G+ S N T PS +R+ LFP S + + S+++ R DV+ +
Sbjct: 627 GVRSTENLFTTPSMDSRRAFALFPSECPKSSLTSSTRTSSHLHSPTRTDVLLS 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,554,496
Number of Sequences: 37544
Number of extensions: 477939
Number of successful extensions: 1470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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