Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0659
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15) 29 3.0
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 5.2
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 28 6.9
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23) 28 6.9
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07) 28 9.1
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 32.7 bits (71), Expect = 0.32
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 571 HNRLTVPSQSNRQTVTLFPHNHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQ 404
HN +T+PSQ +R T+T+ H + +A S Y T I ++H+ + Q
Sbjct: 252 HNTITIPSQYHRNTITIQSQYHHNTIAI---PSQYHHNTIAIPSQYHHNTITIPSQ 304
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -2
Query: 571 HNRLTVPSQSNRQTVTLFPHNHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQ 404
HN +T+PS+ + T+T+ H + + S Y T I ++H+ + Q
Sbjct: 94 HNTITIPSRHQQNTITIPSQYHHNTITM---PSQYHRNTIAIPSQYHHNTITTPTQ 146
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = -2
Query: 571 HNRLTVPSQSNRQTVTL---FPHNHDSL 497
HN +T+PSQ N T+T+ + HN +++
Sbjct: 384 HNTITIPSQYNHNTITIPSQYHHNTNTI 411
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 571 HNRLTVPSQSNRQTVTLFPHNHDSLVAFVLKGSNYIMGTARIDVVFNH 428
HN + +PSQ + T+T+ H + +A S Y T I ++H
Sbjct: 285 HNTIAIPSQYHHNTITIPSQYHHNTIAI---PSQYHRNTIAIPSQYHH 329
>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 32.3 bits (70), Expect = 0.42
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -3
Query: 456 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNH-----SET*AL*KLLQLNC 322
LP M T +T PK + Q FR +KQ++ H E AL K L+C
Sbjct: 40 LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKKEQEEELKALAKKFSLSC 89
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 559 TVPSQSNRQTVTLFPHNHDSLVAFVLKGSNYIMGTARIDVVFNHSNASESDQT 401
TV ++ + TVT+ + D+++ FVL+ I G ++DV + + S QT
Sbjct: 1056 TVITEPDTATVTIL--DDDAVIGFVLESITVIEGAGKVDVEVKRTGNTGSPQT 1106
>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
Length = 333
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -3
Query: 192 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 85
L++P K+F++ CV PG++ R P+ PS++ +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 616 RLGQSLPHSAGITSLHNRL 560
+L SL H G++SLHNRL
Sbjct: 3953 KLSNSLDHDGGLSSLHNRL 3971
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 153 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 67
+ P S P PS +P+ + GSP QP++
Sbjct: 77 LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 182 GESRRAPSAGPMLPVAAVTRRTSRMFHIPTH 274
G R+PS + P+ A+ +R S +FH+ H
Sbjct: 481 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 511
>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
Length = 634
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 337 SATELLAVLNSSGAPNLR*LMMGRYVEHARGASSHRRYRQH 215
+A LL +N++ PNL+ + ++ ++ R H R++QH
Sbjct: 62 TAPALLDAMNAAKIPNLQITTVTQHQQNQRHHQQHHRHQQH 102
>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1741
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 240 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 118
LV A T ++ PAD +L+ SPSR CV T C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786
>SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)
Length = 417
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 182 GESRRAPSAGPMLPVAAVTRRTSRMFHIPTH 274
G R+PS + P+ A+ +R S +FH+ H
Sbjct: 294 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 324
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Frame = -3
Query: 243 RLVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPS-GTPSMSPQKGSPASQPYT 67
RL+ +TG+ G A + S + KH P S P P TPS + +P
Sbjct: 262 RLINRSTGNSGTASPTFITSSANKHAQL----PPSAPASPKPSTPSSEGMPPAGRKEPSI 317
Query: 66 LNRN*TVAAVSSRRNSPHTQKP 1
N + + +R + Q P
Sbjct: 318 ANASNIDTLLGARDTTEIAQPP 339
>SB_38013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 88
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 670 H*TXAFLIEYXGMRFLIXDRPS 735
H A ++EY M+FLI DRP+
Sbjct: 12 HGPGAVMLEYKSMKFLITDRPT 33
>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
Length = 651
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 275 HQLP*IRSSAAVEHSQQFSC 334
H LP I S++ V+HS+QF C
Sbjct: 292 HSLPEISSNSLVKHSKQFFC 311
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 74 GCEAGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 253
GCE+G CG DG+ + GV CFR+ + P+ P P R+T R
Sbjct: 493 GCESGLT-CGK-DGMVIAWDGV---------GCFRDLRPSKTPTTEPQRPETTTKRKTQR 541
Query: 254 MF 259
F
Sbjct: 542 RF 543
>SB_8981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1726
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 293 RSSAAVEHSQQFSCRSF*RAYVSE*FNLICFHILNFCLIAFGCVRVVENDINAGSSHYII 472
R S V + C S+ R + S + ++C H + C +A G V V + + +H ++
Sbjct: 463 RKSCVVFSYSRVFCSSWCRVFCSSWYRVMCSHAV-VCSVAHGAVCSVAHAVVCSVAHGVV 521
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,028,099
Number of Sequences: 59808
Number of extensions: 527006
Number of successful extensions: 1463
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1456
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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