Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0658
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   0.93 
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.7  

>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 610 SICTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCQSAPSFTDWKR 476
           S  TS S ++SI  S   + + HSSPSF  + L   AP   +  R
Sbjct: 460 SPATSPSNQASIHASFTKESSTHSSPSFTLESLFSGAPRVVELTR 504


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
            zf-fungal binuclear cluster type |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -1

Query: 619  FXRSICTSESLRSSIRVSPDFDLTRHSSPSFGS-QHLCQSAPS-FTDW-KRDASGVRKSR 449
            F  ++  + + R ++ +  D  L       +GS   LC      + DW +R +SG+++  
Sbjct: 828  FGSNVLAASTARHNLEI--DLRLMLEMKNYWGSISALCDKMSEIWADWVQRTSSGIQEED 885

Query: 448  T*LDNFILPERTSSVRLHFRY 386
            T  +  I  ER   +  HF Y
Sbjct: 886  TIPNEMIDEERMLDLEKHFMY 906


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,705
Number of Sequences: 5004
Number of extensions: 52013
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)