Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0658
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1043 - 21957041-21957256,21957347-21957517,21957979-219580...    31   0.97 
03_06_0640 + 35230664-35231065,35231957-35232202                       30   1.7  
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    29   3.9  
08_02_0979 - 23252004-23252038,23253874-23254624                       29   3.9  
01_06_0249 + 27868897-27871599                                         29   5.2  
06_02_0315 - 14230234-14232771                                         28   9.1  

>04_03_1043 -
           21957041-21957256,21957347-21957517,21957979-21958019,
           21958465-21958525,21959191-21960075
          Length = 457

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 230 AAVQSRTSGVCLNVCDDTVSGTRRTRLVTRTKESSMCASH 349
           A +++RTSG+CL   D      ++ +L+    +S +C  H
Sbjct: 395 AEMETRTSGLCLQSQDQVTFHCQKLKLIEIKHDSELCCDH 434


>03_06_0640 + 35230664-35231065,35231957-35232202
          Length = 215

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 37  YSFRTRSDRVSFRSTHSDGIIKLITHALKIPKKNFLIRVRXDA 165
           YS R R+ R    ST+ DGI  L+T+  K P+    +++R +A
Sbjct: 156 YSIRKRNSRTGLPSTYYDGIYLLVTYFTK-PESLDALQMRLNA 197


>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 634  APYTQFXRSIC--TSESLRSSIRVSPDFDLTRHSSPSFGSQHLCQSAPSFTDWKRDA 470
            APY +  +S+C  T  +LR+ + +SP  +LT   +P  G +H   S  S TD  RDA
Sbjct: 3173 APYRE--KSLCPDTQHALRNVLEMSPSDNLT--DNPFAGQEHGSFSEGSTTD-SRDA 3224


>08_02_0979 - 23252004-23252038,23253874-23254624
          Length = 261

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 456 FRTPEASRFQSVNEGALWHKCWDPKDGE 539
           F  P A+    +  GALW +CW P+  +
Sbjct: 107 FDLPIAAASLQIARGALWPRCWGPRPAD 134


>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = +3

Query: 465 PEASRFQSVNEGALWHKCWDPKDGELC-----LVRSKSG 566
           P   RF  V E  +    WDP  G+LC     +VRS SG
Sbjct: 301 PYKGRFMVVEEALVADGYWDPTTGQLCFNACPIVRSVSG 339


>06_02_0315 - 14230234-14232771
          Length = 845

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 634 APYTQFXRSICTSESLRSSIRVSPD 560
           A Y  F    C SE +RSS R++PD
Sbjct: 803 ATYAPFVLKRCKSEPMRSSARLAPD 827


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,497
Number of Sequences: 37544
Number of extensions: 345046
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)