Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0658
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01520.1 68414.m00068 myb family transcription factor similar...    33   0.27 
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar...    31   0.81 
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar...    31   0.81 
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    29   2.5  
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ...    29   3.3  
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing...    29   4.3  
At4g11230.1 68417.m01819 respiratory burst oxidase, putative / N...    28   5.7  
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei...    28   5.7  
At1g30790.1 68414.m03764 F-box family protein contains Pfam PF00...    28   7.6  

>At1g01520.1 68414.m00068 myb family transcription factor similar to
           myb-related protein GI:2505876 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 212 CDASVVAAVQSRTSGVCLNVCDDTVS-GTRRTRLVTRTKESSMC 340
           CD S+ ++V     GV  N C  + S   +RTR+VT T +   C
Sbjct: 172 CDVSIPSSVIKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESC 215


>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +2

Query: 128 LKKIFSYASGXTQVNVVFSRFLP*CGRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRTR 307
           ++ I  + +G  Q +VV   F P C  EC        +S  S  C    DD +S TRR  
Sbjct: 83  IESIGEHVNGFQQGDVVLPVFHPHC-EEC-----RDCKSSKSNWCARFADDFLSNTRRYG 136

Query: 308 LVTRTKES 331
           + +R K+S
Sbjct: 137 MTSRFKDS 144


>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 22/68 (32%), Positives = 32/68 (47%)
 Frame = +2

Query: 128 LKKIFSYASGXTQVNVVFSRFLP*CGRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRTR 307
           ++ I  + +G  Q +VV   F P C  EC        +S  S  C    DD +S TRR  
Sbjct: 83  IESIGEHVNGFQQGDVVLPVFHPHC-EEC-----RDCKSSKSNWCARFADDFLSNTRRYG 136

Query: 308 LVTRTKES 331
           + +R K+S
Sbjct: 137 MTSRFKDS 144


>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 1   GLRRSRGRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 114
           G+ +  G+   F+SFRT + ++SF  T S   I L+TH
Sbjct: 82  GVPQLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTH 119


>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -1

Query: 310 KTGPASARNCIIADVQTNTTSPRLHGCDNRRVALASALRQETRKYDVDLR-RAGR 149
           KTG  S  NC  A        P       RR  + S LR      D DLR R GR
Sbjct: 17  KTGDCSRPNCTFAHGNAELRRPGESSFTGRRHNMDSDLRDRRHNMDSDLRDRLGR 71


>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein weak
           similarity to SP|Q09717 Ran-specific GTPase-activating
           protein 1 (Ran binding protein 1) (RANBP1) (Spi1-binding
           protein) {Schizosaccharomyces pombe}; contains Pfam
           profile PF00638: RanBP1 domain
          Length = 440

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 200 CGRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRT 304
           CG+  D  V A   ++      NVC++ V GT +T
Sbjct: 148 CGKSADVQVAATEVAQMVSCDTNVCNNAVEGTDQT 182


>At4g11230.1 68417.m01819 respiratory burst oxidase, putative /
           NADPH oxidase, putative similar to respiratory burst
           oxidase homolog F [gi:3242456], RbohAp108 [gi:2654868]
           from Arabidopsis thaliana, respiratory burst oxidase
           homolog [GI:16549087] from Solanum tuberosum; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 941

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 419 LREDEIIELRS*FSHSRGVSFPISE*RRALAQMLGPERW 535
           L++ EI+ L    SHS   S P S+  RAL+Q L   RW
Sbjct: 322 LKDLEILLLEKDISHS--YSLPFSQTSRALSQNLKDRRW 358


>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
            similar to SP|Q05022 rRNA biogenesis protein RRP5
            {Saccharomyces cerevisiae}; contains Pfam profile
            PF00575: S1 RNA binding domain
          Length = 1838

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = +2

Query: 203  GRECDASVVAAVQSRTSGVCLNVCDDTVSGTRRTRLVTRTKESSMC 340
            G+   ASV A     TSG  L + D +VSGT  T    R K+ S C
Sbjct: 923  GQSVVASVKAVQNPLTSGRLLLLLD-SVSGTSETSRSKRAKKKSSC 967


>At1g30790.1 68414.m03764 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 399

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 589 AILTCKSIVXTGYRGRKTNSNHLVAGSVRSFPXDSWRRYKIXKQSHXG 732
           +I+  +S + + Y    T    +VA S  SFP D  +R  I   SH G
Sbjct: 38  SIIHNQSFIDSFYSISSTRPRFIVAFSNGSFPSDKEKRLFIFSSSHEG 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,477
Number of Sequences: 28952
Number of extensions: 275953
Number of successful extensions: 582
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)