Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0657
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    27   2.0  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    27   3.4  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    26   4.5  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    26   6.0  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    25   7.9  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.9  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   7.9  

>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 251 HVAVGGW-AEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 388
           H  + GW  +       +  +K+    F ++ V D +K+Y FDG+ LD
Sbjct: 169 HETITGWLGDSHVNLPDIRTEKNEVRKFFQNWVSDLIKRYQFDGIRLD 216


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 523 QAVRQSQLPSSTGSDERPL*LLDEIQEL 440
           Q++++ QLPS+   DE+ L L DEI  L
Sbjct: 21  QSLKRCQLPSTLLYDEKGLRLFDEITNL 48


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 269 WAEGGSKYSHMVAQKSTRMSFIRS-VVDFLKKYDFDGLDLD 388
           W + G   + +  + S   S++       + KYDFDGL +D
Sbjct: 189 WQDSGVLLADLDVESSDVSSYLSDHFKSLISKYDFDGLRID 229


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 171 IDPELDVDKSGFRNFTSLRSKHPDVKFMSRLAVGLKA 281
           ID      K+G+    S RS   D  F++ LAVGL+A
Sbjct: 357 IDAANMAKKAGWGLMVSHRSGETDDSFIAHLAVGLEA 393


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +3

Query: 27  RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGVTEKSSEVLIIDPELDVDKSG 203
           R +  F NW + RP    Y I +    L  +L     + + EK    ++++  +  D+  
Sbjct: 28  RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87

Query: 204 FRNF 215
           F  F
Sbjct: 88  FVQF 91


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -1

Query: 290 TWS-RLQPNRQPRHELDIGVFGAEGCEV 210
           TWS +L P     HE ++G+F  E  E+
Sbjct: 344 TWSMKLHPRLHQFHEYEMGIFSFEMLEI 371


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 382 IQTVEVIFLQEVDNASD 332
           + TVE+  LQE++NASD
Sbjct: 223 LDTVELHLLQEIENASD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,487
Number of Sequences: 5004
Number of extensions: 64810
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)