Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0657
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 40 0.001
04_03_0649 - 18402976-18403220,18403305-18404499 36 0.023
01_03_0028 - 11783122-11783381,11783668-11784163 32 0.50
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 31 0.88
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701 30 1.5
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 29 2.7
02_01_0205 - 1379448-1379696,1379827-1379901,1379983-1380056,138... 29 3.5
01_01_0429 + 3254291-3254435,3254902-3255210,3255286-3256747,325... 29 3.5
12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135 28 6.2
09_02_0130 - 4683070-4683651 28 6.2
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 290 YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 400
+S M ++K+ R +FI S ++ + FDGLDL W +P
Sbjct: 129 FSRMASEKNLRRAFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 290 YSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAA 409
++ M A ++R +FI + V ++ FDGLD+ W +P +A
Sbjct: 134 FAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFPASA 173
>01_03_0028 - 11783122-11783381,11783668-11784163
Length = 251
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 350 FLKKYD-FDGLDLDWEYPGAADRGGSFSDKDKFLYFVQELKRAFIR 484
F+ K++ DG D DW++P AD F D D+ + V+ L + R
Sbjct: 187 FVGKHNKMDGSDYDWDWPHTADVYYRFFDPDRDVGLVEHLYKVITR 232
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 239 RCQVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSV 343
+C V G A GG Y +M+ R +FIR V
Sbjct: 6 KCDVEACYPGGAPGGGMYPYMIENAQLRWAFIRKV 40
>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
Length = 369
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 218 IPPLQTPRCQVHVAVGGW 271
+PPLQ PRC+ H + G W
Sbjct: 39 VPPLQLPRCRCHRSEGPW 56
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 415 PVSGTGILPVQIQTVEVIFLQEVDNASDEGHPSALLGHHV*VLGAAF 275
PV GT + V+ V I Q+ + E HP + G+H VL F
Sbjct: 550 PVKGTKLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGF 596
>02_01_0205 -
1379448-1379696,1379827-1379901,1379983-1380056,
1380150-1380237,1380327-1380475,1380688-1380847,
1380933-1381088,1381177-1381365,1381481-1381714,
1381785-1382009,1382097-1382177
Length = 559
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 140 RHREIKRSSHYRS*VGRR*EWFP*LHIPPLQTPRCQVHVAVGGWAEGGSKYSHMVAQKST 319
+ +E KR R +G+ P + PP +++GG + GG K S V+ + +
Sbjct: 469 KEQERKRQRDQRRMLGQGTGESPVVRPPPKNIKNVTRTLSMGGTSTGGKKASASVSSRPS 528
Query: 320 RMSFIRS 340
SF++S
Sbjct: 529 TPSFLKS 535
>01_01_0429 +
3254291-3254435,3254902-3255210,3255286-3256747,
3256950-3257577
Length = 847
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = -3
Query: 600 IRHHVDSVQXLTQLWYMISLHQPEISKRYGRVSSHPLPALMNALFNSWTKYKNLSLSEKE 421
+ H ++ + L +W+ + + R G SS PL A N S T ++S
Sbjct: 659 VAHSLEHLVALV-VWWWKKRAMTKQTDRTGHPSSDPLIADCNICLKSATSGTLDTISPSS 717
Query: 420 PPRSAAPGYS 391
PP S++P Y+
Sbjct: 718 PPPSSSPPYN 727
>12_02_0366 - 18048549-18049100,18049288-18049769,18050058-18051135
Length = 703
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = -1
Query: 269 NRQPRHELDIGVFGAEGCEVTETTLIYVQLRIDNENFA*FLGDANKGINQVGTQIHGDVF 90
NR +D+ A+ C V + L Y++ + ENF LG G T+
Sbjct: 149 NRSLIEPVDVKYGQAKACRVHDIILDYIKCKATEENFVTSLGSTVPGCT---TEYKVRRL 205
Query: 89 DAITSNAGSVHRPITEVTNDARS 21
I SN V+ P + + RS
Sbjct: 206 SVINSNEEDVNIPTSLDLSQVRS 228
>09_02_0130 - 4683070-4683651
Length = 193
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -3
Query: 621 RPITAQIIRH--HVDSVQXLTQLWYMIS-LHQPEISKRYGRVSSHPLPALMNALFNSWTK 451
R +T I H +VD++ T + ++ L P +S+ V+ + +PA L N+WT
Sbjct: 26 RLVTESDIPHLPYVDAIMKETMRMHPVAPLLIPRMSREDATVAGYDVPAGTRVLVNTWTI 85
Query: 450 YKNLSL 433
++ SL
Sbjct: 86 SRDPSL 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,219,798
Number of Sequences: 37544
Number of extensions: 493649
Number of successful extensions: 1262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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