Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0657
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   3.7  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 294 HTWWPRRALGC 326
           HTWWP   L C
Sbjct: 163 HTWWPYDILNC 173


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 314 SSGPPCVST--WSRLQPNRQPRHELDI 240
           ++G P V++  W RL PN +  H L I
Sbjct: 501 NNGVPNVNSVQWPRLNPNEKSLHYLHI 527


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -1

Query: 314 SSGPPCVST--WSRLQPNRQPRHELDI 240
           ++G P V++  W RL PN +  H L I
Sbjct: 501 NNGVPNVNSVQWPRLNPNEKSLHYLHI 527


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 468 FNSWTKYKNLSLSEKEPPRSA 406
           F+   KY+ +++ EK+P RS+
Sbjct: 535 FSKPFKYQGITILEKKPSRSS 555


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 261 LAVGLKAAPSTHTWW 305
           LAVGL A  +   WW
Sbjct: 11  LAVGLGAGQNNKGWW 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,496
Number of Sequences: 438
Number of extensions: 4870
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)