Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0657
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si...    52   3e-07
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si...    50   1e-06
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si...    48   6e-06
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si...    46   2e-05
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si...    44   1e-04
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si...    44   1e-04
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si...    43   2e-04
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si...    40   0.002
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    38   0.006
At3g05240.1 68416.m00572 pentatricopeptide (PPR) repeat-containi...    28   5.2  
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller...    28   6.8  
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put...    27   9.0  

>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 379

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/66 (34%), Positives = 37/66 (56%)
 Frame = +2

Query: 230 QTPRCQVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAA 409
           + P  +  +++GG     + Y+ M +  ++R SFI S +   + Y F GLDLDWEYP +A
Sbjct: 86  RNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSA 145

Query: 410 DRGGSF 427
               +F
Sbjct: 146 TEMTNF 151


>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 398

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 230 QTPRCQVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 400
           + P  +  +++GG       ++ M +   +R SFI+S +   + Y F GLDLDWEYP
Sbjct: 65  RNPHVKTLLSIGGGNADKDAFASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYP 121


>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 363

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 21/57 (36%), Positives = 33/57 (57%)
 Frame = +2

Query: 230 QTPRCQVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 400
           + P  Q  +++GG     S ++ M +  ++R SFI S +   + Y FDGLDL W+YP
Sbjct: 75  KNPHVQTLLSIGGRNADKSAFASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYP 131


>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 261

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 299 MVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAADRGGSFSDKDK-FLYFVQ 460
           M +    R SFI S +   + Y FDGLDLDWEYP  A     F++  K + Y VQ
Sbjct: 1   MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPRNAAEMSDFAELLKEWRYAVQ 55


>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 365

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 245 QVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 400
           Q  +++GG     +  + M +    R +FI S +D  +K DF GLDL WEYP
Sbjct: 87  QTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWEYP 138


>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 362

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%)
 Frame = +2

Query: 245 QVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 400
           Q  +++GG     +  + M +    R +FI S +D  +K DF GLDL WEYP
Sbjct: 79  QTLLSIGGKDADKAVLASMASNSKNRKAFIDSSIDIARKKDFYGLDLAWEYP 130


>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:505267 from [Nicotiana
           tabacum]
          Length = 332

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 227 LQTPRCQVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 400
           ++ P+ +  +++GG     S ++ M +   +R +FI S +   +   F GLDL WEYP
Sbjct: 76  IRNPQVKTLLSIGGKNANNSAFASMASNHQSRKTFIDSWIFIARSNGFHGLDLAWEYP 133


>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
           similar to chitinase, class V GI:899342 from [Nicotiana
           tabacum]
          Length = 289

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 284 SKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYP 400
           S ++ +V+ +++R SFI S +   +   F GLDL WEYP
Sbjct: 74  STFTEIVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +2

Query: 230 QTPRCQVHVAVGGWAEGGSKYSHMVAQKSTRMSFIRSVVDFLKKYDFDGLDLDWEYPGAA 409
           + P  +  +++GG       ++ M +  ++R  FI S +   +   F GLDL+W+YP   
Sbjct: 84  RNPTVKTLLSIGGDFTYNFAFASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYPSIT 143

Query: 410 DRGGSF 427
               +F
Sbjct: 144 TEMDNF 149


>At3g05240.1 68416.m00572 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 548

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 413 RGGSFS-DKDKFLYFVQELKRAFIRAGRGWE-LTLPYRLLISG*WRDIMYQSCVRXWTLS 586
           RG S S + DK L F QE+    +R G   +  T PY L      RDI + SCV  + + 
Sbjct: 80  RGYSNSPNPDKALIFYQEM----LRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVK 135

Query: 587 T 589
           T
Sbjct: 136 T 136


>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
           Ara t 8 identical to profilin 1 (Allergen Ara t 8)
           SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
          Length = 131

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 353 LKKYDFDGLDLDWEYPGAADRGGSFSDKDKFLYFVQELKRAFIRAGRG 496
           LK  + DG+  D+E PG     G F   +K++  +Q  + A IR  +G
Sbjct: 42  LKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYM-VIQGEQGAVIRGKKG 88


>At4g02510.1 68417.m00343 chloroplast outer membrane protein, putative
            similar to chloroplast protein import component Toc159
            [Pisum sativum] GI:8489806, chloroplast outer envelope
            protein 86 [Pisum sativum] GI:599958, GTP-binding protein
            [Pisum sativum] GI:576509
          Length = 1503

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = +3

Query: 93   DIPVDLCTHLIYSFIGVTEKSSEVLIIDPELDVDKSGFRNFTSLRSKHPDVKFMSRLAVG 272
            D+ V  C+H++   IG  +   ++ +++P L        N  SL   HP      +   G
Sbjct: 999  DVFVAQCSHIVQQSIG--QAVGDLRLMNPSL-------MNPVSLVENHP---LCRKNREG 1046

Query: 273  LKAAPSTHTWWPRRALGCPSSEALS 347
            +K  P+  TW  +  L C S + LS
Sbjct: 1047 VKVLPNGQTWRSQLLLLCYSLKVLS 1071


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,191,796
Number of Sequences: 28952
Number of extensions: 362254
Number of successful extensions: 977
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)