Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0655
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.71 
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.0  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.8  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -3

Query: 501 SSRSSDNPETAILDNSFFRSLVDT*TSALTETLTGKLTNTE-SSTLALTGALVNSEASSF 325
           S+ SS    TA  +++   SL    +S+L  T +   T++  SST A   A  +S ASS 
Sbjct: 175 SATSSSLSSTAASNSATSSSLA---SSSLNSTTSATATSSSLSSTAASNSATSSSLASSS 231

Query: 324 IDSQSGATACTDA 286
           ++S + ATA + +
Sbjct: 232 LNSTTSATATSSS 244



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -3

Query: 513 LGAGSSRSSDNPETAILDNSFFRSLVDT*TSALTETLTGKLTNTE-SSTLALTGALVNSE 337
           L + S  SS    ++   +S   S  ++ TSA   T T   T++  SST A   A  +S 
Sbjct: 139 LASSSITSSSLASSSTTSSSLASSSTNSTTSA---TPTSSATSSSLSSTAASNSATSSSL 195

Query: 336 ASSFIDSQSGATACTDA 286
           ASS ++S + ATA + +
Sbjct: 196 ASSSLNSTTSATATSSS 212


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 249  VKKLWSRRVTGCRHQCKPWLR 311
            +KK W RR+ GC+     W R
Sbjct: 1468 IKKTWVRRLKGCQRNVDVWQR 1488


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 246  SVKKLWSRRVTGCRHQCKPWLRT 314
            S+KK W +R+ GC+     W  T
Sbjct: 1464 SLKKTWRKRLEGCQKNVDVWHNT 1486


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 489 SDNPETAILDNSFFRSLVDT*TSAL--TETLTGKLTNTESSTLALTGALVNSEASSFIDS 316
           S+ P+TA          +   TS L  T T +   TNT ++T + + A  ++ ASS   +
Sbjct: 479 SEKPKTAPTGKQLALHPLRRETSILDSTNTTSTNATNTTTTTSSSSTASSSASASSSTSA 538

Query: 315 QSGA 304
            SGA
Sbjct: 539 TSGA 542


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 95  PWPAPWXLIPTPAP*ETPKP 36
           P P P  ++PTPAP   P P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVP 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,932
Number of Sequences: 5004
Number of extensions: 38363
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)