Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0655
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   3.5  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   3.5  

>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 258  LWSRRVTGCRHQCKPWLR 311
            LWSRR+ GCR   + W R
Sbjct: 1722 LWSRRLQGCRRNVEQWQR 1739


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 258  LWSRRVTGCRHQCKPWLR 311
            LWSRR+ GCR   + W R
Sbjct: 1722 LWSRRLQGCRRNVEQWQR 1739


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.132    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,426,746
Number of Sequences: 27780
Number of extensions: 250454
Number of successful extensions: 895
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)