Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0655
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /...    29   2.5  
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /...    29   2.5  
At3g20840.1 68416.m02635 ovule development protein, putative sim...    29   3.3  
At3g15400.1 68416.m01954 anther development protein, putative si...    29   3.3  
At1g04800.1 68414.m00476 glycine-rich protein                          29   3.3  
At3g16460.2 68416.m02097 jacalin lectin family protein contains ...    28   5.8  
At3g16460.1 68416.m02098 jacalin lectin family protein contains ...    28   5.8  
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ...    28   7.7  
At2g28670.1 68415.m03485 disease resistance-responsive family pr...    28   7.7  

>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 334

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 244 RQSRSYGQGESQGAGISASRGSGLAVNKGAGF 339
           R  RS G G  +G G  + RG G    +G G+
Sbjct: 187 RGPRSGGYGSERGGGYGSERGGGYGSERGGGY 218


>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
           RNA-binding protein cp 29 nearly identical to SP|Q43349
           29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29) {Arabidopsis thaliana}
          Length = 342

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 244 RQSRSYGQGESQGAGISASRGSGLAVNKGAGF 339
           R  RS G G  +G G  + RG G    +G G+
Sbjct: 187 RGPRSGGYGSERGGGYGSERGGGYGSERGGGY 218


>At3g20840.1 68416.m02635 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 529

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 172 AAHRAQDKELSTAKVKASNKEVALRQSRSYGQGESQGAGISASR 303
           AA R ++ +   +  K   + +AL  S  YG G S G+G ++SR
Sbjct: 317 AAKRLKEAQALESSRKREAEMIALGSSFQYGGGSSTGSGSTSSR 360


>At3g15400.1 68416.m01954 anther development protein, putative
           similar to anther development protein ATA20 GB:AAC50042
           GI:2708813 from [Arabidopsis thaliana]
          Length = 416

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQG 96
           GFG+G G S   GFG   G+G G    G G+G
Sbjct: 255 GFGEGIGSSGGSGFGEGIGSGGGTGI-GIGEG 285


>At1g04800.1 68414.m00476 glycine-rich protein 
          Length = 200

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQG 96
           G G G+GV    G GV  GAG G+   GAG+G
Sbjct: 96  GGGAGKGVDGGFGKGVDGGAGKGV-DGGAGKG 126


>At3g16460.2 68416.m02097 jacalin lectin family protein contains
           Pfam profile: PF01419 jacalin-like lectin domain;
           similar to myrosinase binding protein [Brassica napus]
           GI:1711296, GI:1655824, myrosinase-binding protein
           homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
           profile PF01419 jacalin-like lectin family
          Length = 647

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQGT 99
           G G G G     G G   G G G    G G GT
Sbjct: 143 GTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGT 175



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQGT 99
           G G G G     G G   G G G    G G GT
Sbjct: 188 GTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGT 220



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQGT 99
           G G G G     G G   G G G    G G GT
Sbjct: 141 GTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGT 173


>At3g16460.1 68416.m02098 jacalin lectin family protein contains
           Pfam profile: PF01419 jacalin-like lectin domain;
           similar to myrosinase binding protein [Brassica napus]
           GI:1711296, GI:1655824, myrosinase-binding protein
           homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
           profile PF01419 jacalin-like lectin family
          Length = 705

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQGT 99
           G G G G     G G   G G G    G G GT
Sbjct: 143 GTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGT 175



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQGT 99
           G G G G     G G   G G G    G G GT
Sbjct: 188 GTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGT 220



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVGIRXQGAGQGT 99
           G G G G     G G   G G G    G G GT
Sbjct: 141 GTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGT 173


>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
           unknown protein (emb|CAB87688.1)
          Length = 1417

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 19  GVSQKKGFGVSXGAGVGIRXQGAGQG 96
           G+    GFG S G G G+   GAG G
Sbjct: 570 GLITASGFGCSAGLGKGLYSNGAGSG 595


>At2g28670.1 68415.m03485 disease resistance-responsive family
           protein / fibroin-related contains similarity to silk
           fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
           contains disease resistance response protien domain
           Pfam:FP03018
          Length = 447

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 1   GFGQGQGVSQKKGFGVSXGAGVG-IRXQGAGQGTRVTS 111
           GFG G G S     G   GAG G I   G+G G   T+
Sbjct: 64  GFGAGSGSSGSGSTGSGLGAGTGSIPSSGSGPGLLPTA 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,123
Number of Sequences: 28952
Number of extensions: 254815
Number of successful extensions: 997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)