Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0654
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    29   0.93 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    29   1.2  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.5  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +1

Query: 79  LENRRRVLQKVIVRILQRLS 138
           LE+RRR+L+KVIVR   R+S
Sbjct: 407 LESRRRILEKVIVRESHRMS 426


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -1

Query: 512 YVECVTSLTYWLIVXAEEIVSSKDRTLT----PQTPVFCTSTWNFSCTI-ILSSTNKAEL 348
           Y+      TYW+I    E  ++K RT       QT   C S  NFS  + I+S+ N A +
Sbjct: 793 YINFSNCFTYWIINCILEKKNTKARTAVISFFIQTAYKCLSLQNFSTLMSIVSALNSAPI 852

Query: 347 F 345
           +
Sbjct: 853 Y 853


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 444 RQNFDPTNTSFLHVHLEFFLHDHPLVNEQS*AFLQRPDGSFLLIP 310
           + NF+    +  H+HL  + H H   + QS  ++  P+  F   P
Sbjct: 22  KANFESIRINLQHMHLYHYEHIHLFTSSQS--YMYHPNARFSYSP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,548,194
Number of Sequences: 5004
Number of extensions: 71818
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)