Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0654
         (923 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0198 + 15528576-15528645,15528746-15528893,15529182-155293...    29   3.9  
11_08_0098 - 28334865-28336114,28336228-28336357                       29   6.9  
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672     29   6.9  
01_06_0091 - 26363070-26363361,26363467-26363625,26363708-263638...    29   6.9  
10_08_0201 + 15746790-15746889,15748726-15748863,15750715-157507...    28   9.1  

>09_04_0198 +
           15528576-15528645,15528746-15528893,15529182-15529377,
           15529512-15529604,15530403-15530462,15530563-15530637,
           15531072-15531152,15531262-15531603,15531967-15531999
          Length = 365

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 480 VDSGCRGDRIVKRQNFDPTNTSFLHVHLE 394
           +D+GC  D    RQ+ DP+ +   H+HLE
Sbjct: 290 IDNGCSNDE--DRQSVDPSTSVVYHLHLE 316


>11_08_0098 - 28334865-28336114,28336228-28336357
          Length = 459

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 278 NASITKYSSFSGIRRKLPSGR--WRKAQLCSLTRG*SCKKNSRWTCR 412
           N+S++  SSFSGI      GR   R+A    L R  S + +S  +CR
Sbjct: 373 NSSVSARSSFSGIGSSFNGGRLGMRRADEVLLERNFSARYSSSSSCR 419


>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
          Length = 641

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 87  PPARTSKGHCTNSPTT*RSGSIMKRTATSSCPVCRRGL 200
           PPA+T    CT+         I+K +++S CP+CRR L
Sbjct: 401 PPAKTVITSCTHIYCQTCIMKILK-SSSSRCPICRRSL 437


>01_06_0091 -
           26363070-26363361,26363467-26363625,26363708-26363880,
           26366639-26366810,26366912-26367294
          Length = 392

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +2

Query: 230 DETLQEIYRLQGCTLINASIT--KYSSFSGIRRKLPSGRWRKAQLCSLTRG*SCKKNSRW 403
           D++L  +Y   GC  + A     KY     +  K    RWR +  C L R       S+W
Sbjct: 84  DDSLP-MYDTAGCPFVEAEFDCQKYGRPDKLYLKY---RWRPSS-CELPRFNGLDFLSKW 138

Query: 404 TCRKLVFVGSKFCLLTIRSPRXPLSTNTSTKSRTQHRG 517
             +K++FVG    L    S    L     +   T  RG
Sbjct: 139 RGKKILFVGDSISLNQWESLACMLHAAAPSSRTTYSRG 176


>10_08_0201 +
           15746790-15746889,15748726-15748863,15750715-15750792,
           15751251-15752632
          Length = 565

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = -1

Query: 563 DHH*NHTFQIGWDDYLLYVECVTSLTYWLIVXAEEIVSSKDRTLTPQTPVFCTSTWNFSC 384
           +++   +F +G DD       +T   + L+    +  S  +    PQ P   ++TW   C
Sbjct: 192 NYYDKRSFSLGVDDEAFKKMMITDGCFLLLTTLHDTSSQSEPE--PQRPA-ASNTWRSFC 248

Query: 383 TIILSSTNKAELFSSVPTAV 324
            +  S+  + E  ++VP  V
Sbjct: 249 CLFESNPAEVEQTAAVPPTV 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,800,066
Number of Sequences: 37544
Number of extensions: 485926
Number of successful extensions: 1167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)