Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0654
(923 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein. 32 2.6
BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein. 32 2.6
BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein. 32 2.6
BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein. 32 2.6
AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens ... 32 2.6
AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens ... 32 2.6
AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein. 32 2.6
J02943-1|AAB59523.1| 405|Homo sapiens CBG protein. 31 7.8
BC058021-1|AAH58021.1| 405|Homo sapiens serpin peptidase inhibi... 31 7.8
BC056259-1|AAH56259.1| 405|Homo sapiens serpin peptidase inhibi... 31 7.8
>M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein.
Length = 707
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 110 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIY 253
SLY ++ + +Y + SG S ++S LS+ AT+ETLQE++
Sbjct: 460 SLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 506
>BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 110 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIY 253
SLY ++ + +Y + SG S ++S LS+ AT+ETLQE++
Sbjct: 232 SLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 278
>BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 110 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIY 253
SLY ++ + +Y + SG S ++S LS+ AT+ETLQE++
Sbjct: 232 SLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 278
>BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 110 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIY 253
SLY ++ + +Y + SG S ++S LS+ AT+ETLQE++
Sbjct: 232 SLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 278
>AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar
to Nucleolin. ).
Length = 603
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 110 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIY 253
SLY ++ + +Y + SG S ++S LS+ AT+ETLQE++
Sbjct: 353 SLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 399
>AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens
cDNA FLJ34423 fis, clone HHDPC2008123, highly similar to
NUCLEOLIN. ).
Length = 687
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 110 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIY 253
SLY ++ + +Y + SG S ++S LS+ AT+ETLQE++
Sbjct: 437 SLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 483
>AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein.
Length = 710
Score = 32.3 bits (70), Expect = 2.6
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 110 SLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIY 253
SLY ++ + +Y + SG S ++S LS+ AT+ETLQE++
Sbjct: 460 SLY-YTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVF 506
>J02943-1|AAB59523.1| 405|Homo sapiens CBG protein.
Length = 405
Score = 30.7 bits (66), Expect = 7.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 352 SALFVDERMIVQEKFQVDVQKTGVCGVKVLSFDDTISSAXTINQYVNEVT 501
+ALF+D + + E F D++ V ++F D +++ IN YV T
Sbjct: 129 NALFLDGSLELLESFSADIKHYYESEVLAMNFQDWATASRQINSYVKNKT 178
>BC058021-1|AAH58021.1| 405|Homo sapiens serpin peptidase
inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), memb protein.
Length = 405
Score = 30.7 bits (66), Expect = 7.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 352 SALFVDERMIVQEKFQVDVQKTGVCGVKVLSFDDTISSAXTINQYVNEVT 501
+ALF+D + + E F D++ V ++F D +++ IN YV T
Sbjct: 129 NALFLDGSLELLESFSADIKHYYESEVLAMNFQDWATASRQINSYVKNKT 178
>BC056259-1|AAH56259.1| 405|Homo sapiens serpin peptidase
inhibitor, clade A (alpha-1 antiproteinase,
antitrypsin), memb protein.
Length = 405
Score = 30.7 bits (66), Expect = 7.8
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 352 SALFVDERMIVQEKFQVDVQKTGVCGVKVLSFDDTISSAXTINQYVNEVT 501
+ALF+D + + E F D++ V ++F D +++ IN YV T
Sbjct: 129 NALFLDGSLELLESFSADIKHYYESEVLAMNFQDWATASRQINSYVKNKT 178
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,974,186
Number of Sequences: 237096
Number of extensions: 2638663
Number of successful extensions: 5157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5157
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12047931574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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