Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0654
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    32   0.50 
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    30   2.7  
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical ...    29   6.2  

>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 87  PPARTSKGHCTNSPTT*RSGSIMKRTATSSCPVCRR 194
           PP RTSK   T +PTT R+ +  + T T+  P  RR
Sbjct: 338 PPPRTSKRPVTQAPTTPRATTTRRPTTTTPRPTPRR 373


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 220 RCYR*NSARNLPVARLHPHKCFNNKIFKLLR 312
           RCYR  S+ ++     HP    +N  FK+LR
Sbjct: 369 RCYRAKSSNSIRTVAAHPESSRHNTFFKVLR 399


>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical protein
            K09C8.5 protein.
          Length = 1328

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 274  HKCFNNKIFKLLRDQKETAVGTLEKSSALFVDERMI 381
            H   N  +F+  +D KET  G L   +A F  ER++
Sbjct: 1008 HTLINTHLFRFDKDFKETKQGHLPLHNAFFAPERLV 1043


>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical protein
            K09C8.5 protein.
          Length = 1328

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 274  HKCFNNKIFKLLRDQKETAVGTLEKSSALFVDERMI 381
            H   N  +F+  +D KET  G L   +A F  ER++
Sbjct: 1008 HTLINTHLFRFDKDFKETKQGHLPLHNAFFAPERLV 1043


>AC006835-1|AAF40015.2|  903|Caenorhabditis elegans Hypothetical
           protein ZK993.2 protein.
          Length = 903

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 162 TATSSCPVCRRGLLYPH 212
           T TS CP+C R  L PH
Sbjct: 502 TVTSDCPICSREFLEPH 518


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,929,804
Number of Sequences: 27780
Number of extensions: 408985
Number of successful extensions: 1031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)