Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0654
         (923 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04330.1 68416.m00458 trypsin and protease inhibitor family p...    32   0.62 
At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   5.8  
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran...    29   5.8  
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran...    29   5.8  

>At3g04330.1 68416.m00458 trypsin and protease inhibitor family
           protein / Kunitz family protein weak similarity to 21
           kDa seed protein [Theobroma cacao] GI:21909, Kunitz
           trypsin inhibitor TI3 [Populus tremuloides] GI:13605354;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 202

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = +1

Query: 235 NSARNLPVARLHPHKCFNNKIFKLLRDQKETAVGTLEKSSALFVDERMIVQEKFQVDVQK 414
           NS    P+   HP+      +  +L ++ ET V    K    FVD R   +  F   VQ+
Sbjct: 67  NSCPQQPLMVTHPNMAAPTPVMFVLSNKSETVVRESAKLKIKFVDPRPCGESGFWRVVQR 126

Query: 415 TGVCGVKVLSFDDTIS 462
           T   G  VL+  ++ S
Sbjct: 127 TSSEGEVVLNGSESTS 142


>At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to leucoanthocyanidin dioxygenase
           [Malus domestica][SP|P51091], flavonol synthase [Petunia
           x hybrida][GI:311658]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 349

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 179 SGLSAWTLISALSFGATDETLQEIYRL--QGCTLINASITKYS 301
           S LS W ++  ++ G T   L +IY+L  + C L +    KY+
Sbjct: 69  SALSTWGVVQVINHGITKALLDKIYKLTKEFCALPSEEKQKYA 111


>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to SP|Q9P804
           N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
           2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 691

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 178 VRSVGVDSYIRTFLRCYR*NSA-RNLPVARLHPHKCFNNKIFKL 306
           V SV +D Y+R F+R Y   SA +N P+   + ++C     F L
Sbjct: 378 VLSVQMDFYVRVFVRVYTSASAMKNTPLKLSYVYQCIGCDSFHL 421


>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to
           N2,N2-dimethylguanosine tRNA methyltransferase [Homo
           sapiens] GI:11066198; contains Pfam profile PF02005:
           N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 599

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 178 VRSVGVDSYIRTFLRCYR*NSA-RNLPVARLHPHKCFNNKIFKL 306
           V SV +D Y+R F+R Y   SA +N P+   + ++C     F L
Sbjct: 290 VLSVQMDFYVRVFVRVYTSASAMKNTPLKLSYVYQCIGCDSFHL 333


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,855,782
Number of Sequences: 28952
Number of extensions: 384601
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)