Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0653
         (903 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    69   7e-14
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   4.3  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   10.0 

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 68.5 bits (160), Expect = 7e-14
 Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
 Frame = +2

Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE-QIRP---DRQVLMWSATWPRE 424
           DF+ +   +     Y VLDEADRMLDMGF   + +++  Q  P   +RQ LM+SAT+P E
Sbjct: 298 DFVNRGNVSFNSLKYFVLDEADRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEE 357

Query: 425 VQNLAEEFLHDYIQINIG 478
           VQ LA +FL +YI I +G
Sbjct: 358 VQQLAGKFLLNYIFIAVG 375



 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 26/67 (38%), Positives = 38/67 (56%)
 Frame = +3

Query: 72  PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
           P+V++++PTRELA QI     +F  +  V+   I+GG     Q   +  G  I++ATPGR
Sbjct: 236 PVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGR 295

Query: 252 LLIFWRR 272
           L  F  R
Sbjct: 296 LKDFVNR 302



 Score = 25.8 bits (54), Expect = 0.46
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFR 731
           ETKR  D +             IHGD  Q +R+  L  F+
Sbjct: 417 ETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDFK 456



 Score = 25.4 bits (53), Expect = 0.61
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 746 ILVATTXRPXDSMLEDLKFVDKLXLSQ*FGGYVXRXGRTGXV 871
           +LVAT        ++D++ V    L +    YV R GRTG V
Sbjct: 462 VLVATGVAARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRV 503


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
 Frame = +2

Query: 608 C*NQKXGRRHMXGDXP------CXLACPRHPRGXEPAGP 706
           C NQ+  RRH+ G  P      C + C       +P GP
Sbjct: 60  CINQRCERRHIKGAIPVVSLSTCSMLCGSTQLWPQPTGP 98


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 323 YQPHPAPNKCIGAGSLSPSPKNQESTRSSNN 231
           Y P+ +PN  IG   LSPS  N  S  S ++
Sbjct: 144 YDPY-SPNGKIGREDLSPSSLNGYSADSCDS 173


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 862 GPAXTXHVTP-ELLGKXXFIHKFQIF 788
           GP      T  ELLG    +HKF+I+
Sbjct: 637 GPELNYTTTEKELLGVIFALHKFRIY 662


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,354
Number of Sequences: 336
Number of extensions: 4887
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)