Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0653
(903 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 145 9e-36
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 93 4e-20
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 87 2e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 81 2e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 5e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 62 8e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 57 4e-09
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 54 2e-08
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 54 2e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 4e-08
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 52 8e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 52 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 1e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 48 2e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 46 6e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 46 6e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 46 1e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 42 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 41 3e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 4e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 38 0.003
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 35 0.018
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 34 0.024
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 33 0.042
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 27 3.6
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 27 3.6
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 6.4
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 26 6.4
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 26 8.4
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 8.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 145 bits (351), Expect = 9e-36
Identities = 64/94 (68%), Positives = 81/94 (86%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
LD L+ TNLRR TYLVLDEADRMLDMGFEPQIRKI++QIRPDRQ +M+SATWP+EVQ
Sbjct: 257 LDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQR 316
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFVRN 535
LA ++L+DYIQ+ +GSL+L+A+HNI +++ V N
Sbjct: 317 LARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDN 350
Score = 115 bits (277), Expect = 8e-27
Identities = 57/80 (71%), Positives = 63/80 (78%)
Frame = +3
Query: 18 LPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGP 197
LPAIVHI QP L DGPIVLVLAPTRELA QIQQ +FG+S +RNTC++GG P+GP
Sbjct: 178 LPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGP 237
Query: 198 QGRCLERGVEIVIATPGRLL 257
Q R L RGVEI IATPGRLL
Sbjct: 238 QIRDLIRGVEICIATPGRLL 257
Score = 39.9 bits (89), Expect = 5e-04
Identities = 19/44 (43%), Positives = 22/44 (50%)
Frame = +3
Query: 615 TKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPP 746
TKR DDI IHGD Q +RD+VLN+FR P
Sbjct: 378 TKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 93.5 bits (222), Expect = 4e-20
Identities = 41/74 (55%), Positives = 56/74 (75%)
Frame = +2
Query: 278 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD 457
TNL RCTYLVLDEADRM D+GFEPQ+ +II IRPDRQ +++SAT+PR ++ LA + L
Sbjct: 564 TNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKK 623
Query: 458 YIQINIGSLELSAN 499
++I +G + A+
Sbjct: 624 PVEITVGGRSVVAS 637
Score = 73.7 bits (173), Expect = 3e-14
Identities = 36/81 (44%), Positives = 51/81 (62%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
LLP HI +Q L +GPI +++ PTRELA QI + F + +++R C +GGAP
Sbjct: 473 LLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIK 532
Query: 195 PQGRCLERGVEIVIATPGRLL 257
Q L+RG EIV+ TPGR++
Sbjct: 533 DQIADLKRGAEIVVCTPGRMI 553
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 87.4 bits (207), Expect = 2e-18
Identities = 44/101 (43%), Positives = 69/101 (68%), Gaps = 4/101 (3%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIR----PDRQVLMWSATWPR 421
+D +++ +L +LVLDEADRMLDMGFEPQIR I+E +RQ LM+SAT+PR
Sbjct: 317 VDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPR 376
Query: 422 EVQNLAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRR 544
++Q LA +FL DY+ +++G + S + NI++ ++ V + +
Sbjct: 377 DIQLLARDFLKDYVFLSVGRVG-STSENITQKVVHVEDSEK 416
Score = 52.8 bits (121), Expect = 6e-08
Identities = 26/62 (41%), Positives = 39/62 (62%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
P L+LAPTREL QI + + +F VR ++GGA Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315
Query: 252 LL 257
L+
Sbjct: 316 LV 317
Score = 29.5 bits (63), Expect = 0.68
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRN 734
ETKR D + IHGD Q++R+ L FR+
Sbjct: 438 ETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRS 478
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 81.0 bits (191), Expect = 2e-16
Identities = 46/102 (45%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD------RQVLMWSATW 415
LD + + + + YLVLDEADRMLD GFE IR II PD RQ + +SATW
Sbjct: 297 LDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHT-PDPTRNGSRQTVFFSATW 355
Query: 416 PREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGR 541
P V+ LA FL D ++I IGS EL+A+ NI++++ + + R
Sbjct: 356 PESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPR 397
Score = 55.2 bits (127), Expect = 1e-08
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
P VLV++PTRELA Q + N Q +++ ++GGAPK Q R + ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARA-AKNASVIIGTPGR 295
Query: 252 LL 257
LL
Sbjct: 296 LL 297
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.5 bits (155), Expect = 5e-12
Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDD---GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 185
++P I+ I P L + GP +VLAPTRELAQQIQ N+F + + R + GG
Sbjct: 304 IIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGH 363
Query: 186 PKGPQGRCLERGVEIVIATPGRLLIFWRRR 275
Q + +G IV+ATPGRLL RR
Sbjct: 364 AFEEQSFQMSQGAHIVVATPGRLLDCLERR 393
Score = 63.3 bits (147), Expect = 5e-11
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 19/116 (16%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD---------------- 385
LD LE+ L +CTY+V+DEADRMLDMGFE + KI+ +
Sbjct: 387 LDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSS 446
Query: 386 ---RQVLMWSATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRR 544
RQ +M+SAT P V NLA+ +L + + + IG++ + + R+ M + ++
Sbjct: 447 SSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKK 502
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 62.5 bits (145), Expect = 8e-11
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = +2
Query: 254 LDFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
+D LE + +L+ YL++DEADR+LDM F P I KI++ I +R+ L++SAT +V+
Sbjct: 176 MDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVE 235
Query: 431 NLAEEFLHDYIQINIGSLELSANHNISRLLMF 526
L LH +++ + S + + I R L F
Sbjct: 236 KLQRASLHQPVRVAVSSKFSTVDTLIQRYLFF 267
Score = 51.2 bits (117), Expect = 2e-07
Identities = 31/80 (38%), Positives = 40/80 (50%)
Frame = +3
Query: 18 LPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGP 197
LP I + N P +VLAPTRELA QI + G SI VR+ I GG
Sbjct: 102 LPVIQELWNNPSPF-----FAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVT 156
Query: 198 QGRCLERGVEIVIATPGRLL 257
Q L + +++ TPGRL+
Sbjct: 157 QAVALSKKPHVLVCTPGRLM 176
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 56.8 bits (131), Expect = 4e-09
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Frame = +3
Query: 15 LLPAIVHIINQPRLL--RDDGPIVLVLAPTRELAQQIQQVANEFGQS--IHVRNTC-IFG 179
LLP + +I P+ L R G +++APTREL QQI VAN+ + H +C + G
Sbjct: 196 LLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIG 255
Query: 180 GAPKGPQGRCLERGVEIVIATPGRL 254
G K + + +GV I+I TPGRL
Sbjct: 256 GEKKKSEKARIRKGVNILIGTPGRL 280
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 257 DFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWP-REVQ 430
D LE E ++ + ++VLDE DR++DMGFE + KI+ + ++ + P R+V
Sbjct: 282 DHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVT 341
Query: 431 NLAEEFLHDYIQ 466
L + D ++
Sbjct: 342 MLCSATMKDTVK 353
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/74 (33%), Positives = 43/74 (58%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
LD K + CT V+DEAD++L F P I +++ +RQ+ ++SAT+P V+N
Sbjct: 174 LDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKN 233
Query: 434 LAEEFLHDYIQINI 475
++ L+ +IN+
Sbjct: 234 FMDKHLNKPYEINL 247
Score = 42.7 bits (96), Expect = 7e-05
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 257
L+L PTRELA Q QV G+ ++V+ GG L V IV+ TPGR+L
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVL 174
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 54.4 bits (125), Expect = 2e-08
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D +++ VLDEAD ML GF+ QI I + + P QV++ SAT P++V +
Sbjct: 150 DMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEV 209
Query: 437 AEEFLHDYIQINIGSLELS 493
+F+ D I+I + EL+
Sbjct: 210 TTKFMRDPIRILVKKDELT 228
Score = 52.4 bits (120), Expect = 8e-08
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 260
L+LAPTRELAQQIQ+V G ++V GG L+ GV +V+ TPGR+
Sbjct: 91 LILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVHD 150
Query: 261 FWRRR 275
+RR
Sbjct: 151 MIQRR 155
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 615 TKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFR 731
T+R VD + +HGD +Q RD ++++FR
Sbjct: 267 TRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFR 305
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.6 bits (123), Expect = 4e-08
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +2
Query: 299 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIG 478
Y+V DEADR+ +MGF Q+ +I+ + RQ L++SAT PR + + A+ L D + + +
Sbjct: 216 YVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL- 274
Query: 479 SLELSANHNISRLLMFVRNGRR 544
+E + ++ V+ R
Sbjct: 275 DVESKVSADLQSAFFSVKTAER 296
Score = 48.4 bits (110), Expect = 1e-06
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
++P I H+ + L + L+L+P RELA Q +V +F + +R+ I GG
Sbjct: 124 VIPMIEHLKST---LANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLE 180
Query: 195 PQGRCLERGVEIVIATPGRLL 257
Q L +IV+ATPGR L
Sbjct: 181 EQFSLLSGKPDIVVATPGRFL 201
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 52.4 bits (120), Expect = 8e-08
Identities = 26/79 (32%), Positives = 44/79 (55%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D + + R L+LDEAD +L+ GF+ QI I + P QV++ SAT P++V +
Sbjct: 152 DMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211
Query: 437 AEEFLHDYIQINIGSLELS 493
+F + ++I + EL+
Sbjct: 212 TNKFTTNPVRILVKRDELT 230
Score = 49.6 bits (113), Expect = 6e-07
Identities = 27/65 (41%), Positives = 36/65 (55%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 260
L+L+PTRELA QIQ V G ++V+ GG G + L+ G +V TPGR+
Sbjct: 93 LILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVTD 152
Query: 261 FWRRR 275
RRR
Sbjct: 153 MIRRR 157
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +3
Query: 66 DGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATP 245
+G V++++PTRELA QI VA E + H + GGA + + L +GV +++ATP
Sbjct: 160 NGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLLVATP 219
Query: 246 GRLL 257
GRLL
Sbjct: 220 GRLL 223
Score = 46.4 bits (105), Expect = 6e-06
Identities = 23/52 (44%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
Frame = +2
Query: 287 RRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQVLMWSATWPREVQNLA 439
R LV+DEADR+L++GFE ++R+I++ + +RQ L++SAT +V++LA
Sbjct: 235 RNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLA 286
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +2
Query: 302 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLH--DYIQIN 472
L+LDEADR+LDMGF + I+ + RQ +++SAT + V++LA L D+I ++
Sbjct: 189 LILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVH 247
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +3
Query: 66 DGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATP 245
DG LV++PTRELA Q + + G+ I GG + L R + I++ TP
Sbjct: 110 DGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTP 168
Query: 246 GRLL 257
GRLL
Sbjct: 169 GRLL 172
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.0 bits (109), Expect = 2e-06
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
P + LAP+RELA+QI V E G+ V+ FG P+G ++ +IVI TPG
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKID--AQIVIGTPGT 240
Query: 252 LLIFWRRRQRTCADALIW 305
++ +RRQ D ++
Sbjct: 241 VMDLMKRRQLDARDIKVF 258
Score = 46.4 bits (105), Expect = 6e-06
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDM-GFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
+D +++ + R VLDEAD MLD G Q +I + + Q++++SAT+ V+
Sbjct: 242 MDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVE 301
Query: 431 NLAEEFLHDYIQINIGSLELSANHNISRLLM 523
AE F + +I + + ELS I +L M
Sbjct: 302 KYAERFAPNANEIRLKTEELSV-EGIKQLYM 331
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 46.4 bits (105), Expect = 6e-06
Identities = 27/58 (46%), Positives = 33/58 (56%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRL 254
LV+APTRELA QI Q S ++R I GG Q R L + +V+ATPGRL
Sbjct: 196 LVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRL 253
Score = 34.3 bits (75), Expect = 0.024
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +2
Query: 275 TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE----QIRPDRQVLMWSATWPREVQ 430
T N ++ LVLDEADR+L ++ K++E + RQ ++SAT+ +Q
Sbjct: 263 TGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQ 318
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 46.4 bits (105), Expect = 6e-06
Identities = 24/62 (38%), Positives = 35/62 (56%)
Frame = +3
Query: 69 GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 248
G L+L PTRELA QI + G ++++++ I GG Q L + +V+ATPG
Sbjct: 75 GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134
Query: 249 RL 254
RL
Sbjct: 135 RL 136
Score = 35.5 bits (78), Expect = 0.010
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 266 EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI--RPDRQVLMWSATWPREVQNL 436
E+ LRR +LV+DEADR+L F + + DRQ L+++AT ++ L
Sbjct: 145 EETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 45.6 bits (103), Expect = 1e-05
Identities = 28/88 (31%), Positives = 43/88 (48%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
++P + ++ +P+ + VL+L PTRELA Q VA + + GG
Sbjct: 314 IVPILERLLYRPKKVPTTR--VLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLK 371
Query: 195 PQGRCLERGVEIVIATPGRLLIFWRRRQ 278
Q + L + +IVIATPGR + R Q
Sbjct: 372 LQEQELRKRPDIVIATPGRFIDHMRNSQ 399
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/65 (32%), Positives = 41/65 (63%)
Frame = +2
Query: 302 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINIGS 481
+V+DEADRML+ GF ++ +II+ RQ +++SAT +V +L L+ +++ + +
Sbjct: 409 MVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDN 468
Query: 482 LELSA 496
+ +A
Sbjct: 469 KKTTA 473
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERG-VEIVIATPGRL 254
++L+PTRELA QI + A + +R + GG K + + RG ++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
Score = 39.9 bits (89), Expect = 5e-04
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 305 VLDEADRMLDMGFEPQIRKIIEQIRPDR-QVLMWSATWPREVQNLAEEFL-HDYIQIN 472
+LDEADR++DMGF I I E + + + L +SAT P +V N+ L D+ IN
Sbjct: 193 ILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLIN 250
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.7 bits (91), Expect = 3e-04
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +2
Query: 281 NLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV-LMWSATWPREVQNLAEEFLHD 457
+ + + V+DEADR+ + GF Q I+ ++SAT P V+ LA+ D
Sbjct: 186 SFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVD 245
Query: 458 YIQINIGSLELSANHNISRLLMFV 529
I+I +G L+ +A +I + L+FV
Sbjct: 246 PIRIIVG-LKDAATDSIDQRLLFV 268
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +3
Query: 36 IINQPRLLRDDGPIVLVLAPTRELAQQIQQVANE--FGQSIHV 158
I+ + +L G +++APTREL +QI + A + FG S+ +
Sbjct: 104 ILQKLQLHVPGGYRAIIVAPTRELCEQIYRQAEKLSFGTSLKI 146
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 302 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSAT 412
L+LDEAD ++DMGF+ ++ II Q+ R+ ++SAT
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSAT 194
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEF---------GQSIHVRNTCIFG-GAPKGPQGRCLERGVEI 230
L++APTRELA QI V E G V + I G G E+ +
Sbjct: 76 LIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLASFREKNPSV 135
Query: 231 VIATPGRL 254
VI TPGRL
Sbjct: 136 VIGTPGRL 143
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 37.5 bits (83), Expect = 0.003
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDD-GPIVLVLAPTRELAQQIQQVANEFGQ--SIHVRNTCIFGGA 185
L+P + ++ Q ++ + G L+L PTRELAQQ+ V + S H+R + +
Sbjct: 69 LIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNS 128
Query: 186 PKGPQGRCLERGVEIVIATPGRLLI 260
Q L +IVIATP R ++
Sbjct: 129 SDTVQRPLLLDLPDIVIATPSRCVV 153
Score = 33.1 bits (72), Expect = 0.056
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 284 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
L + +LV+DEAD ML G+ ++ + + Q + SAT + + +L
Sbjct: 162 LDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASL 212
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.018
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +2
Query: 272 ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL 451
E+ +L+ Y+V+DEADR+LD F+ + ++ +I + + S + QN++ FL
Sbjct: 279 ESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEISHPKCLQNKSNILDLD-QNISPTFL 337
Query: 452 HD 457
D
Sbjct: 338 PD 339
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 34.3 bits (75), Expect = 0.024
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +3
Query: 66 DGPI-VLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQG----RCLERGVEI 230
DG + VLVL TRELA QI+ F + + T +F G Q + + I
Sbjct: 117 DGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHI 176
Query: 231 VIATPGRL 254
V+ATPGRL
Sbjct: 177 VVATPGRL 184
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 33.5 bits (73), Expect = 0.042
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +3
Query: 195 PQGRCLERGVEIVIATPGRLLI 260
P GRCL++G+E VI TP RLL+
Sbjct: 132 PCGRCLKKGLECVIETPPRLLM 153
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -2
Query: 323 YQPHPAPNKCIGAGSLSPSPKNQESTRSSNNNFHSPLKTSALWSLWSTTKDTSVPHVDAL 144
Y P PN G ++ SP+ ++ RS + +SP + + +L + +++ P+
Sbjct: 214 YMPPDTPNNLEGVLAIVSSPQYAQALRSFSQALNSPGGVNIISALGLSLDESANPNEGGA 273
Query: 143 TKFI 132
+F+
Sbjct: 274 LQFL 277
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 398 MWS-ATWPREVQNLAEEFLHDYIQINIGSLELSANHNISRLLMF 526
+WS A + R LA+E L Y+ + I LE +N+S+ LMF
Sbjct: 330 IWSNAQFLRSYTLLAQESLTIYLLLFIPKLEAKYLNNLSKSLMF 373
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 104 LSCWSQHKDYWTIIS 60
L CWS H DY T++S
Sbjct: 114 LDCWSCHTDYPTVLS 128
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -2
Query: 746 WRRXVAELVQHIVAVLLVXVPVDGEGTQAGTVXRLTYVVD 627
W+ VAE + H+ +++ + VDG T ++VD
Sbjct: 288 WKPDVAEKLMHLSCLVISMLDVDGFRIDKATQMTADFIVD 327
>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
Mag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 25.8 bits (54), Expect = 8.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 221 SPLKTSALWSLWSTTK 174
+P +T+A W LW T+K
Sbjct: 200 APFRTAAAWYLWKTSK 215
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 341 SPCPTFYQPHPAPNKCIGAGSLSPSPKNQESTRSSNNNFHSPLKTSAL 198
SP F P + L+ K+ ST S+ +FHSPL++ +
Sbjct: 87 SPSDVFTLEKPIASTHRWLSKLTALSKSTNSTLSTPKSFHSPLQSRGI 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,691,579
Number of Sequences: 5004
Number of extensions: 76629
Number of successful extensions: 308
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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