Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0653
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       78   1e-16
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 78.2 bits (184), Expect = 1e-16
 Identities = 41/79 (51%), Positives = 55/79 (69%), Gaps = 4/79 (5%)
 Frame = +2

Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKII--EQIRP--DRQVLMWSATWPR 421
           LDF+EK         +LVLDEADRMLDMGF P I K++  E + P  +RQ LM+SAT+P 
Sbjct: 335 LDFVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPD 394

Query: 422 EVQNLAEEFLHDYIQINIG 478
           EVQ+LA  FL++Y+ + +G
Sbjct: 395 EVQHLARRFLNNYLFLAVG 413



 Score = 46.0 bits (104), Expect = 5e-07
 Identities = 25/64 (39%), Positives = 36/64 (56%)
 Frame = +3

Query: 72  PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
           P V++++PTREL  QI Q   +F  +  ++    +GG     Q   L  G  I++ATPGR
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGR 333

Query: 252 LLIF 263
           LL F
Sbjct: 334 LLDF 337



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 743 AILVATTXRPXDSMLEDLKFVDKLXLSQ*FGGYVXRXGRTGXV 871
           +ILVAT        ++++  V    L +    YV R GRTG V
Sbjct: 503 SILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRV 545


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect(2) = 2.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 263 LEKETTNLRRCTYLVLDEADRML 331
           L++E  NL     L+ DE++RML
Sbjct: 28  LKQENLNLDDIDSLLEDESERML 50



 Score = 20.6 bits (41), Expect(2) = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 320 DRMLDMGFEPQIRKIIEQ 373
           D  +DM  +  IRKII Q
Sbjct: 83  DTDMDMDLKDSIRKIIRQ 100


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 372  CSIIFLI*GSKPMSNILSASSSTK*VHRRRFVVSFSKKSRVYQ 244
            C I++     +P++       S     +RRFVV+  + S VYQ
Sbjct: 1527 CPILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQ 1569


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 372  CSIIFLI*GSKPMSNILSASSSTK*VHRRRFVVSFSKKSRVYQ 244
            C I++     +P++       S     +RRFVV+  + S VYQ
Sbjct: 1523 CPILYFTIQYRPINEFHWTLVSNSVKMQRRFVVTNLQPSSVYQ 1565


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 594 PNYYIAETKRXVDDIC 641
           PNY + +++   D+IC
Sbjct: 537 PNYVVPDSEHGYDEIC 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,506
Number of Sequences: 438
Number of extensions: 5589
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)