Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0653
(903 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 134 6e-32
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 131 7e-31
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 123 1e-28
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 103 1e-22
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 101 7e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 101 7e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 101 7e-22
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 100 1e-21
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 98 8e-21
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 98 8e-21
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 97 1e-20
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 91 1e-18
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 87 1e-17
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 87 2e-17
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 84 1e-16
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 84 1e-16
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 79 4e-15
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 75 9e-14
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 68 1e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 63 2e-10
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 62 5e-10
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 9e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 9e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 60 1e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 60 1e-09
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 60 2e-09
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 59 3e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 56 2e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 56 4e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 56 4e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 56 4e-08
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 56 4e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 55 7e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 55 7e-08
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 55 7e-08
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 54 1e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 54 2e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 53 2e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 53 2e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 53 3e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 53 3e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 52 5e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 52 7e-07
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 52 7e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 52 7e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 51 1e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 50 2e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 50 2e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 50 2e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 6e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 1e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 47 2e-05
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 46 3e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 46 3e-05
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 46 3e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 46 3e-05
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 46 5e-05
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 7e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.085
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 33 0.20
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS... 31 0.79
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 1.4
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 29 3.2
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 29 3.2
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 29 3.2
At1g18550.1 68414.m02314 kinesin motor protein-related contains ... 29 4.2
At5g41070.1 68418.m04992 double-stranded RNA-binding domain (DsR... 29 5.6
At1g79250.1 68414.m09239 protein kinase, putative similar to vir... 28 7.4
At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containi... 28 9.7
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 134 bits (325), Expect = 6e-32
Identities = 88/208 (42%), Positives = 114/208 (54%), Gaps = 4/208 (1%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D LE + TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQ L+WSATWPREV+
Sbjct: 300 IDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVET 359
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC* 613
LA +FL D + IGS +L AN +I++++ V + N L L+ L K+L
Sbjct: 360 LARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEK-YNRLLTLLKQLM-DGSKILIFV 417
Query: 614 NQKXG----RRHMXGDXPCXLACPRHPRGXEPAGPRLCAEPVPQXAAAILVATTXRPXDS 781
K G R + D LA H + R+ AE + I+ AT
Sbjct: 418 ETKRGCDQVTRQLRMDGWPALAI--HGDKTQSERDRVLAE-FKSGRSPIMTATDVAARGL 474
Query: 782 MLEDLKFVDKLXLSQ*FGGYVXRXGRTG 865
++D+K V Y+ R GRTG
Sbjct: 475 DVKDIKCVVNYDFPNTLEDYIHRIGRTG 502
Score = 121 bits (291), Expect = 8e-28
Identities = 58/81 (71%), Positives = 68/81 (83%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
LLPA+VH+ QPRL +DDGPIVL+LAPTRELA QIQ+ + +FG VR+TCI+GGAPKG
Sbjct: 220 LLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG 279
Query: 195 PQGRCLERGVEIVIATPGRLL 257
PQ R L RGVEIVIATPGRL+
Sbjct: 280 PQIRDLRRGVEIVIATPGRLI 300
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 131 bits (316), Expect = 7e-31
Identities = 60/92 (65%), Positives = 74/92 (80%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D LE + TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQ L+WSATWPREV+
Sbjct: 300 IDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVET 359
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFV 529
LA +FL D + IGS +L AN +I++++ V
Sbjct: 360 LARQFLRDPYKAIIGSTDLKANQSINQVIEIV 391
Score = 121 bits (291), Expect = 8e-28
Identities = 58/81 (71%), Positives = 68/81 (83%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
LLPA+VH+ QPRL +DDGPIVL+LAPTRELA QIQ+ + +FG VR+TCI+GGAPKG
Sbjct: 220 LLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKG 279
Query: 195 PQGRCLERGVEIVIATPGRLL 257
PQ R L RGVEIVIATPGRL+
Sbjct: 280 PQIRDLRRGVEIVIATPGRLI 300
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPP 746
ETKR D + IHGD Q +RD VL +F++ P
Sbjct: 418 ETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSP 462
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 123 bits (297), Expect = 1e-28
Identities = 54/97 (55%), Positives = 74/97 (76%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D +E TNLRR TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQ L WSATWP+EV+
Sbjct: 234 IDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQ 293
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRR 544
L+++FL++ ++ IGS +L AN I +++ + ++
Sbjct: 294 LSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQK 330
Score = 120 bits (288), Expect = 2e-27
Identities = 57/81 (70%), Positives = 66/81 (81%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
LLPAIVH+ QP L DGPIVLVLAPTRELA QIQQ A++FG S ++ TCI+GG PKG
Sbjct: 154 LLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKG 213
Query: 195 PQGRCLERGVEIVIATPGRLL 257
PQ R L++GVEIVIATPGRL+
Sbjct: 214 PQVRDLQKGVEIVIATPGRLI 234
Score = 35.9 bits (79), Expect = 0.037
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPP 746
+TK+ D I IHGD +Q +RD+VL++FR+ P
Sbjct: 352 DTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSP 396
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 103 bits (248), Expect = 1e-22
Identities = 70/205 (34%), Positives = 106/205 (51%), Gaps = 2/205 (0%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D LE + + ++ + LVLDEADRMLDMGFEPQIRKI+ +I P RQ LM++ATWP+EV+ +
Sbjct: 570 DILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKI 629
Query: 437 AEEFLHDYIQINIGSL-ELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC* 613
A + L + +Q+NIG + EL+AN I++ + V + L LR +R +++C
Sbjct: 630 ASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERR-LEQILRSQERGSKVIIFCS 688
Query: 614 NQKXGRRHMXGDXPCXLACPRHPRGXEPAGPR-LCAEPVPQXAAAILVATTXRPXDSMLE 790
++ A H G + G R + +L+AT ++
Sbjct: 689 TKRLCDHLARSVGRHFGAVVIH--GDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIK 746
Query: 791 DLKFVDKLXLSQ*FGGYVXRXGRTG 865
D++ V YV R GRTG
Sbjct: 747 DIRVVINYDFPTGVEDYVHRIGRTG 771
Score = 93.1 bits (221), Expect = 2e-19
Identities = 46/82 (56%), Positives = 59/82 (71%)
Frame = +3
Query: 9 GILLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 188
G L+PA + ++ R +GP VL+LAPTRELA QIQ A FG+S + TC++GGAP
Sbjct: 488 GYLIPAFI-LLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAP 546
Query: 189 KGPQGRCLERGVEIVIATPGRL 254
KGPQ + LERG +IV+ATPGRL
Sbjct: 547 KGPQLKELERGADIVVATPGRL 568
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 678 IHGDXNQQDRDYVLNQFRN 734
IHGD Q +RD+VLNQFR+
Sbjct: 709 IHGDKTQGERDWVLNQFRS 727
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (242), Expect = 7e-22
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D LE +LR+ +YLVLDEADRMLDMGFEPQIRKI+++I RQ LM++ATWP+ V+ +
Sbjct: 293 DILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Query: 437 AEEFLHDYIQINIGSL-ELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC* 613
A + L + Q+NIG++ EL AN +I++ + V + L LR + +++C
Sbjct: 353 AADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR-LEQILRSQEPGSKVIIFCS 411
Query: 614 NQKXGRRHMXGDXPCXLACPRHPRGXEPAGPRLCAEPVPQXAAAILVATTXRPXDSMLED 793
++ + A H +P + + +LVAT ++D
Sbjct: 412 TKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQ-FRSGRTPVLVATDVAARGLDVKD 470
Query: 794 LKFVDKLXLSQ*FGGYVXRXGRTG 865
++ V YV R GRTG
Sbjct: 471 IRAVVNYDFPNGVEDYVHRIGRTG 494
Score = 94.7 bits (225), Expect = 7e-20
Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 GILLPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 182
G L+P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++GG
Sbjct: 211 GYLIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
Query: 183 APKGPQGRCLERGVEIVIATPGRL 254
APKGPQ R LERG +IV+ATPGRL
Sbjct: 268 APKGPQLRDLERGADIVVATPGRL 291
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +3
Query: 678 IHGDXNQQDRDYVLNQFRNXPPPYW-SPRLXAXGTRCWKI*NLWINXXFPNNSGVTXIVS 854
IHGD +Q +RD VLNQFR+ P + + A G I +N FPN GV V
Sbjct: 432 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDI-RAVVNYDFPN--GVEDYVH 488
Query: 855 --AGPGXSXXTGKGLKIF 902
G + TG+ F
Sbjct: 489 RIGRTGRAGATGQAFTFF 506
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (242), Expect = 7e-22
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D LE +LR+ +YLVLDEADRMLDMGFEPQIRKI+++I RQ LM++ATWP+ V+ +
Sbjct: 293 DILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Query: 437 AEEFLHDYIQINIGSL-ELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC* 613
A + L + Q+NIG++ EL AN +I++ + V + L LR + +++C
Sbjct: 353 AADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR-LEQILRSQEPGSKVIIFCS 411
Query: 614 NQKXGRRHMXGDXPCXLACPRHPRGXEPAGPRLCAEPVPQXAAAILVATTXRPXDSMLED 793
++ + A H +P + + +LVAT ++D
Sbjct: 412 TKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQ-FRSGRTPVLVATDVAARGLDVKD 470
Query: 794 LKFVDKLXLSQ*FGGYVXRXGRTG 865
++ V YV R GRTG
Sbjct: 471 IRAVVNYDFPNGVEDYVHRIGRTG 494
Score = 94.7 bits (225), Expect = 7e-20
Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 GILLPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 182
G L+P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++GG
Sbjct: 211 GYLIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
Query: 183 APKGPQGRCLERGVEIVIATPGRL 254
APKGPQ R LERG +IV+ATPGRL
Sbjct: 268 APKGPQLRDLERGADIVVATPGRL 291
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +3
Query: 678 IHGDXNQQDRDYVLNQFRNXPPPYW-SPRLXAXGTRCWKI*NLWINXXFPNNSGVTXIVS 854
IHGD +Q +RD VLNQFR+ P + + A G I +N FPN GV V
Sbjct: 432 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDI-RAVVNYDFPN--GVEDYVH 488
Query: 855 --AGPGXSXXTGKGLKIF 902
G + TG+ F
Sbjct: 489 RIGRTGRAGATGQAFTFF 506
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 101 bits (242), Expect = 7e-22
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 1/204 (0%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D LE +LR+ +YLVLDEADRMLDMGFEPQIRKI+++I RQ LM++ATWP+ V+ +
Sbjct: 293 DILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKI 352
Query: 437 AEEFLHDYIQINIGSL-ELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC* 613
A + L + Q+NIG++ EL AN +I++ + V + L LR + +++C
Sbjct: 353 AADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRR-LEQILRSQEPGSKVIIFCS 411
Query: 614 NQKXGRRHMXGDXPCXLACPRHPRGXEPAGPRLCAEPVPQXAAAILVATTXRPXDSMLED 793
++ + A H +P + + +LVAT ++D
Sbjct: 412 TKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQ-FRSGRTPVLVATDVAARGLDVKD 470
Query: 794 LKFVDKLXLSQ*FGGYVXRXGRTG 865
++ V YV R GRTG
Sbjct: 471 IRAVVNYDFPNGVEDYVHRIGRTG 494
Score = 94.7 bits (225), Expect = 7e-20
Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 GILLPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 182
G L+P +H+ R+ D GP +LVL+PTRELA QIQ+ A +FG+S + TC++GG
Sbjct: 211 GYLIPGFLHL---QRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
Query: 183 APKGPQGRCLERGVEIVIATPGRL 254
APKGPQ R LERG +IV+ATPGRL
Sbjct: 268 APKGPQLRDLERGADIVVATPGRL 291
Score = 34.3 bits (75), Expect = 0.11
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +3
Query: 678 IHGDXNQQDRDYVLNQFRNXPPPYW-SPRLXAXGTRCWKI*NLWINXXFPNNSGVTXIVS 854
IHGD +Q +RD VLNQFR+ P + + A G I +N FPN GV V
Sbjct: 432 IHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDI-RAVVNYDFPN--GVEDYVH 488
Query: 855 --AGPGXSXXTGKGLKIF 902
G + TG+ F
Sbjct: 489 RIGRTGRAGATGQAFTFF 506
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 100 bits (240), Expect = 1e-21
Identities = 47/89 (52%), Positives = 68/89 (76%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D LE + +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ RQ LM++ATWP+EV+ +
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423
Query: 437 AEEFLHDYIQINIGSL-ELSANHNISRLL 520
A + L + Q+NIG++ EL AN +I++ +
Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTI 452
Score = 89.4 bits (212), Expect = 3e-18
Identities = 45/84 (53%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Frame = +3
Query: 9 GILLPAIVHIINQPRLLRDD--GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 182
G L+P +H+ R+ D GP +LVL+PTRELA QIQ A +FG+S + C++GG
Sbjct: 282 GYLIPGFMHL---QRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGG 338
Query: 183 APKGPQGRCLERGVEIVIATPGRL 254
APKGPQ + +ERGV+IV+ATPGRL
Sbjct: 339 APKGPQLKEIERGVDIVVATPGRL 362
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 678 IHGDXNQQDRDYVLNQFRNXPPPYW-SPRLXAXGTRCWKI*NLWINXXFPN 827
IHGD +Q +RD VLNQFR+ P + + A G I + +N FPN
Sbjct: 503 IHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDI-RVVVNYDFPN 552
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 97.9 bits (233), Expect = 8e-21
Identities = 44/81 (54%), Positives = 64/81 (79%)
Frame = +2
Query: 278 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD 457
TNLRR TYLV+DEADRM DMGFEPQI +I++ IRPDRQ +++SAT+PR+V+ LA + L+
Sbjct: 542 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNK 601
Query: 458 YIQINIGSLELSANHNISRLL 520
++I +G + N +I++L+
Sbjct: 602 PVEIQVGGRSV-VNKDITQLV 621
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +3
Query: 9 GILLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 188
G +LP + HI +QP + DGPI LV+APTREL QQI +F +++ + ++GG+
Sbjct: 449 GFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSG 508
Query: 189 KGPQGRCLERGVEIVIATPGRLL 257
Q L+RG EIV+ TPGR++
Sbjct: 509 VAQQISELKRGTEIVVCTPGRMI 531
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 97.9 bits (233), Expect = 8e-21
Identities = 62/196 (31%), Positives = 98/196 (50%)
Frame = +2
Query: 278 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD 457
TNLRR T+LV+DEADRM DMGFEPQI +II+ IRP+RQ +++SAT+PR+V+ LA + L+
Sbjct: 675 TNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNK 734
Query: 458 YIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC*NQKXGRRH 637
++I +G + N +I++L+ R + L L + L++ +Q+
Sbjct: 735 PVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLEL-LGEWSEKGKILVFVQSQEKCDAL 792
Query: 638 MXGDXPCXLACPRHPRGXEPAGPRLCAEPVPQXAAAILVATTXRPXDSMLEDLKFVDKLX 817
C G + +L+AT+ +++L+ V
Sbjct: 793 YRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFD 852
Query: 818 LSQ*FGGYVXRXGRTG 865
+ YV R GRTG
Sbjct: 853 APNHYEDYVHRVGRTG 868
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = +3
Query: 9 GILLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAP 188
G +LP + HI +QP + DGPI LV+APTREL QQI +F + + +R ++GG+
Sbjct: 582 GFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSG 641
Query: 189 KGPQGRCLERGVEIVIATPGRLL 257
Q L+RG EIV+ TPGR++
Sbjct: 642 VAQQISELKRGTEIVVCTPGRMI 664
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/89 (49%), Positives = 66/89 (74%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D L+ + + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQ L++SAT P +V+
Sbjct: 363 IDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEK 422
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLL 520
LA E L D I++ +G + + AN +I++++
Sbjct: 423 LAREILSDPIRVTVGEVGM-ANEDITQVV 450
Score = 85.8 bits (203), Expect = 3e-17
Identities = 41/81 (50%), Positives = 58/81 (71%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
+LP IVHI++QP L RD+GPI ++ APTRELA QI A +F ++ +R + ++GG K
Sbjct: 283 VLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKH 342
Query: 195 PQGRCLERGVEIVIATPGRLL 257
Q + L+ G EIV+ATPGRL+
Sbjct: 343 EQFKELKAGCEIVVATPGRLI 363
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 90.6 bits (215), Expect = 1e-18
Identities = 70/212 (33%), Positives = 103/212 (48%), Gaps = 9/212 (4%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQVLMWSATWPRE 424
D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R RQ L++SAT+PRE
Sbjct: 300 DLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPRE 359
Query: 425 VQNLAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRR--MIN*LHCSLRY-LQRRXP 595
+Q LA +FL +YI + +G + S + + R+ + + +R +++ LH +Q +
Sbjct: 360 IQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQA 419
Query: 596 KLLYC*NQKXGRRHMXGDXPCXLACPRHP-RGXEPAGPR-LCAEPVPQXAAAILVATTXR 769
L K G + + C P G R + + ILVAT
Sbjct: 420 LTLVFVETKRGADSLE-NWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVA 478
Query: 770 PXDSMLEDLKFVDKLXLSQ*FGGYVXRXGRTG 865
+ + V L YV R GRTG
Sbjct: 479 ARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTG 510
Score = 66.9 bits (156), Expect = 2e-11
Identities = 33/72 (45%), Positives = 45/72 (62%)
Frame = +3
Query: 39 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 218
+ +PR R P+ ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 227 VQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELER 286
Query: 219 GVEIVIATPGRL 254
GV+I++ATPGRL
Sbjct: 287 GVDILVATPGRL 298
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPP 746
ETKR D + IHGD QQ+R+ L F++ P
Sbjct: 426 ETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTP 470
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 87.4 bits (207), Expect = 1e-17
Identities = 40/89 (44%), Positives = 63/89 (70%), Gaps = 1/89 (1%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D +E L +++VLDEADRMLDMGFE +R I+ RQ++M+SATWP +V L
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 313
Query: 437 AEEFLH-DYIQINIGSLELSANHNISRLL 520
A+EF+ + I++ IGS++L+ANH++ +++
Sbjct: 314 AQEFMDPNPIKVIIGSVDLAANHDVMQII 342
Score = 75.8 bits (178), Expect = 4e-14
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Frame = +3
Query: 18 LPAIVHIINQPRLL----RDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 185
+PAI+H++ + + + + P LVL+PTRELA QI V E G+ +++ C++GG+
Sbjct: 170 IPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGS 229
Query: 186 PKGPQGRCLERGVEIVIATPGRL 254
KGPQ + GV+IVI TPGRL
Sbjct: 230 SKGPQISAIRSGVDIVIGTPGRL 252
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 87.0 bits (206), Expect = 2e-17
Identities = 44/91 (48%), Positives = 64/91 (70%), Gaps = 4/91 (4%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPD---RQVLMWSATWPRE 424
D LE+ +L+ +L LDEADRMLDMGFEPQIRKI++Q+ P RQ +++SAT+PRE
Sbjct: 287 DLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPRE 346
Query: 425 VQNLAEEFLHDYIQINIGSLELSANHNISRL 517
+Q LA +FL +YI + +G + S + + R+
Sbjct: 347 IQRLASDFLSNYIFLAVGRVGSSTDLIVQRV 377
Score = 67.7 bits (158), Expect = 1e-11
Identities = 34/72 (47%), Positives = 46/72 (63%)
Frame = +3
Query: 39 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 218
I +PR +R P+ ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 214 IERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELER 273
Query: 219 GVEIVIATPGRL 254
GV+I++ATPGRL
Sbjct: 274 GVDILVATPGRL 285
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPP 746
ETK+ D + IHGD +QQ+R+ L F+ P
Sbjct: 413 ETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTP 457
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 83.8 bits (198), Expect = 1e-16
Identities = 43/96 (44%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQVLMWSATWPRE 424
D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R RQ +++SAT+P +
Sbjct: 292 DLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQ 351
Query: 425 VQNLAEEFLHDYIQINIGSLELSANHNISRLLMFVR 532
+Q LA +F+ +YI + +G + S+ I++ + FV+
Sbjct: 352 IQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQ 386
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +3
Query: 39 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 218
+ +PR R P ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 219 VERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Query: 219 GVEIVIATPGRL 254
G +I++ATPGRL
Sbjct: 279 GCDILVATPGRL 290
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPP 746
ETKR D + IHGD QQ+R+ L F+ P
Sbjct: 416 ETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTP 460
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 83.8 bits (198), Expect = 1e-16
Identities = 43/96 (44%), Positives = 67/96 (69%), Gaps = 4/96 (4%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQVLMWSATWPRE 424
D LE+ +++ +L LDEADRMLDMGFEPQIRKI+EQ+ R RQ +++SAT+P +
Sbjct: 292 DLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQ 351
Query: 425 VQNLAEEFLHDYIQINIGSLELSANHNISRLLMFVR 532
+Q LA +F+ +YI + +G + S+ I++ + FV+
Sbjct: 352 IQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQ 386
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +3
Query: 39 INQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLER 218
+ +PR R P ++L+PTRELA QI A +F V+ +GG P Q R LER
Sbjct: 219 VERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELER 278
Query: 219 GVEIVIATPGRL 254
G +I++ATPGRL
Sbjct: 279 GCDILVATPGRL 290
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 612 ETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPP 746
ETKR D + IHGD QQ+R+ L F+ P
Sbjct: 416 ETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTP 460
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 79.0 bits (186), Expect = 4e-15
Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D L K+ +L C YL LDEADR++D+GFE IR++ + + RQ L++SAT P ++Q
Sbjct: 291 DMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIF 350
Query: 437 AEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPK-LLYC* 613
A L + +N+G +AN ++ + + +V+ +++ L C LQ+ P L++C
Sbjct: 351 ARSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLEC----LQKTSPPVLIFCE 405
Query: 614 NQ 619
N+
Sbjct: 406 NK 407
Score = 49.2 bits (112), Expect = 4e-06
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Frame = +3
Query: 15 LLPAIVHIINQPRLL---RDDGPIVLVLAPTRELAQQIQQVANEFGQSI------HVRNT 167
+LP I+ + + ++ +GPI L++ P+RELA+Q +V +F + +R+
Sbjct: 201 VLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSL 260
Query: 168 CIFGGAPKGPQGRCLERGVEIVIATPGRL 254
GG Q ++RGV IV+ATPGRL
Sbjct: 261 LCIGGIDMRSQLEVVKRGVHIVVATPGRL 289
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 594 PNYYIAETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFR 731
P E K VDDI IHG +Q+DR+Y ++ F+
Sbjct: 399 PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFK 444
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 74.5 bits (175), Expect = 9e-14
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D L K+ +L C L LDEADR++D+GFE IR + + + RQ L++SAT P ++Q
Sbjct: 242 DILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIF 301
Query: 437 AEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPK-LLYC* 613
A L + +N+G +AN ++ + + +V+ +++ L C LQ+ P L++C
Sbjct: 302 ATSALVKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLEC----LQKTTPPVLIFCE 356
Query: 614 NQ 619
N+
Sbjct: 357 NK 358
Score = 51.6 bits (118), Expect = 7e-07
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Frame = +3
Query: 15 LLPAIVHIINQPRLL---RDDGPIVLVLAPTRELAQQIQQVANEFGQSI------HVRNT 167
+LP I+ + + ++ +GPI LV+ P+RELA+Q V +F S+ +R+
Sbjct: 152 VLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSL 211
Query: 168 CIFGGAPKGPQGRCLERGVEIVIATPGRL 254
GG Q +++GV IV+ATPGRL
Sbjct: 212 LCIGGVDMRSQLDVVKKGVHIVVATPGRL 240
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 594 PNYYIAETKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFR 731
P E K VDDI IHG +Q+DRDY ++ F+
Sbjct: 350 PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFK 395
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 67.7 bits (158), Expect = 1e-11
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRD---DGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGA 185
+LP + +I P + + +GP +V+APTRELAQQI++ +F + R T I GG
Sbjct: 368 VLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQ 427
Query: 186 PKGPQGRCLERGVEIVIATPGRLLIFWRRR 275
QG + +G EIVIATPGRL+ RR
Sbjct: 428 SIEEQGLKITQGCEIVIATPGRLIDCLERR 457
Score = 61.3 bits (142), Expect = 9e-10
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 17/93 (18%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD----------- 385
+D LE+ L +C Y+VLDEADRM+DMGFEPQ+ +++ ++P+
Sbjct: 451 IDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKI 510
Query: 386 -RQVLMWSATWPREVQNLAEEFLHDYIQINIGS 481
R M+SAT P V+ LA ++L + + + IG+
Sbjct: 511 YRTTYMFSATMPPGVERLARKYLRNPVVVTIGT 543
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/71 (42%), Positives = 45/71 (63%)
Frame = +3
Query: 60 RDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIA 239
R P+ LVLAPTRELA+Q+++ E S+ C++GG P G Q R L+ GV++ +
Sbjct: 175 RGRNPLCLVLAPTRELARQVEKEFRESAPSLDT--ICLYGGTPIGQQMRQLDYGVDVAVG 232
Query: 240 TPGRLLIFWRR 272
TPGR++ +R
Sbjct: 233 TPGRVIDLMKR 243
Score = 58.8 bits (136), Expect = 5e-09
Identities = 24/74 (32%), Positives = 50/74 (67%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D +++ NL ++VLDEAD+ML +GF + I+E++ RQ +M+SAT P +++
Sbjct: 238 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRS 297
Query: 434 LAEEFLHDYIQINI 475
L +++L++ + +++
Sbjct: 298 LTKKYLNNPLTVDL 311
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/74 (39%), Positives = 47/74 (63%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D +E + L YLVLDEAD+ML +GFE + I+E + RQ +++SAT P V+
Sbjct: 240 IDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKK 299
Query: 434 LAEEFLHDYIQINI 475
LA ++L + + I++
Sbjct: 300 LARKYLDNPLNIDL 313
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
P LVLAPTRELA+Q+++ E + ++ C++GG Q L RGV++V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 252 LL 257
++
Sbjct: 239 II 240
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 9e-10
Identities = 39/119 (32%), Positives = 66/119 (55%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
LD +K L+ C+ LV+DEAD++L F+P + +I + RQ+LM+SAT+P V++
Sbjct: 261 LDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKD 320
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC 610
+ FL + IN+ EL+ I++ FV R+ I+ L+ LQ +++C
Sbjct: 321 FKDRFLTNPYVINLMD-ELTLK-GITQFYAFVEE-RQKIHCLNTLFSKLQIN-QSIIFC 375
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 257
+++ PTRELA Q QV E G+ + ++ GG L + V +++ TPGR+L
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 9e-10
Identities = 39/119 (32%), Positives = 66/119 (55%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
LD +K L+ C+ LV+DEAD++L F+P + +I + RQ+LM+SAT+P V++
Sbjct: 261 LDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKD 320
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC 610
+ FL + IN+ EL+ I++ FV R+ I+ L+ LQ +++C
Sbjct: 321 FKDRFLTNPYVINLMD-ELTLK-GITQFYAFVEE-RQKIHCLNTLFSKLQIN-QSIIFC 375
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 257
+++ PTRELA Q QV E G+ + ++ GG L + V +++ TPGR+L
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/71 (40%), Positives = 43/71 (60%)
Frame = +3
Query: 60 RDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIA 239
R P LVLAPTRELA+Q+++ E S+ C++GG P G Q R L G+++ +
Sbjct: 187 RGKNPQCLVLAPTRELARQVEKEFRESAPSLDT--ICLYGGTPIGQQMRELNYGIDVAVG 244
Query: 240 TPGRLLIFWRR 272
TPGR++ +R
Sbjct: 245 TPGRIIDLMKR 255
Score = 58.0 bits (134), Expect = 8e-09
Identities = 24/74 (32%), Positives = 50/74 (67%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D +++ NL ++VLDEAD+ML +GF + I++++ RQ +M+SAT P +++
Sbjct: 250 IDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRS 309
Query: 434 LAEEFLHDYIQINI 475
L +++L++ + I++
Sbjct: 310 LTKKYLNNPLTIDL 323
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/74 (37%), Positives = 47/74 (63%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
LD +K L+ C LV+DEAD++L + F+P I ++I+ + RQ+LM+SAT+P V++
Sbjct: 284 LDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKS 343
Query: 434 LAEEFLHDYIQINI 475
+ +L IN+
Sbjct: 344 FKDRYLKKPYIINL 357
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 257
++L PTRELA Q QV E + + + GG L + V +++ TPGR+L
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 60.1 bits (139), Expect = 2e-09
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Frame = +3
Query: 15 LLPAIVHIINQP-RLLRDDG----PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFG 179
+LP + ++N P + R G P VLVL PTRELA+Q+ + +G S+ + + C++G
Sbjct: 151 VLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYG 210
Query: 180 GAPKGPQGRCLERGVEIVIATPGRL 254
G Q L+RGV+IV+ TPGR+
Sbjct: 211 GDSYPVQEGKLKRGVDIVVGTPGRI 235
Score = 48.4 bits (110), Expect = 6e-06
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR--QVLMWSATWPREVQ 430
D +E++ + + VLDEAD ML MGF + I+ ++ Q L++SAT P V+
Sbjct: 237 DHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVK 296
Query: 431 NLAEEFL-HDYIQIN-IGSLELSANHNISRL 517
N++ FL D I+ +G+ ++ A++++ +
Sbjct: 297 NISNRFLKRDQKTIDLVGNDKMKASNSVRHI 327
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/73 (45%), Positives = 42/73 (57%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 260
LVLAPTRELAQQI++V G + V+ GG R L+ GV +V+ TPGR+
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFD 172
Query: 261 FWRRRQRTCADAL 299
RRQ ADA+
Sbjct: 173 L-LRRQSLRADAI 184
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D L +++ VLDEAD ML GF+ QI I + + QV ++SAT P E +
Sbjct: 172 DLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEI 231
Query: 437 AEEFLHDYIQINIGSLELS 493
+F++ ++I + EL+
Sbjct: 232 TRKFMNKPVRILVKRDELT 250
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
P+ +VLAPTREL Q++ A G+ + + + GG P Q +++GVE++I TPGR
Sbjct: 187 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 246
Query: 252 LL 257
++
Sbjct: 247 VV 248
Score = 51.6 bits (118), Expect = 7e-07
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D L K T L VLDE D ML GF Q+ +I + + QVL++SAT REV+
Sbjct: 248 VDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEK 306
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFV 529
+ + I ++IG+ N +++L ++V
Sbjct: 307 VGGSLAKEIILVSIGNPN-KPNKAVNQLAIWV 337
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/62 (38%), Positives = 39/62 (62%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
P+ +VLAPTREL Q++ A G+ + + + GG P Q +++GVE++I TPGR
Sbjct: 50 PLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGR 109
Query: 252 LL 257
++
Sbjct: 110 VV 111
Score = 51.6 bits (118), Expect = 7e-07
Identities = 31/92 (33%), Positives = 49/92 (53%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
+D L K T L VLDE D ML GF Q+ +I + + QVL++SAT REV+
Sbjct: 111 VDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEK 169
Query: 434 LAEEFLHDYIQINIGSLELSANHNISRLLMFV 529
+ + I ++IG+ N +++L ++V
Sbjct: 170 VGGSLAKEIILVSIGNPN-KPNKAVNQLAIWV 200
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
LD +K L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P V+
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKA 313
Query: 434 LAEEFLHDYIQINI 475
+ L IN+
Sbjct: 314 FKDRHLRKPYVINL 327
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 257
++L PTRELA Q QV E + ++++ GG L + V +++ TPGR+L
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
LD +K L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P V+
Sbjct: 254 LDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKA 313
Query: 434 LAEEFLHDYIQINI 475
+ L IN+
Sbjct: 314 FKDRHLRKPYVINL 327
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLL 257
++L PTRELA Q QV E + ++++ GG L + V +++ TPGR+L
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D +++ + R L+LDE+D ML GF+ QI + + PD QV + SAT P E+ +
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEM 225
Query: 437 AEEFLHDYIQINIGSLELS 493
+F+ + ++I + EL+
Sbjct: 226 TSKFMTEPVKILVKRDELT 244
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 260
L+L+PTRELA Q ++ G +++ GG G R LE GV +V TPGR+
Sbjct: 107 LILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCD 166
Query: 261 FWRRRQ-RTCADALI 302
+RR RT A L+
Sbjct: 167 MIKRRSLRTRAIKLL 181
Score = 33.9 bits (74), Expect = 0.15
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 615 TKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRNXPPPYW-SPRLXAXGTRCWK 791
TKR VD + +HGD Q++RD ++N+FR+ + + A G +
Sbjct: 283 TKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQ 342
Query: 792 I*NLWINXXFPNN 830
+ +L IN PNN
Sbjct: 343 V-SLVINYDLPNN 354
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/65 (43%), Positives = 38/65 (58%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 260
LVLAPTRELAQQI++V G + V+ GG R L+ GV +V+ TPGR+
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 261 FWRRR 275
+R+
Sbjct: 171 MLKRQ 175
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/79 (34%), Positives = 43/79 (54%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D L++++ VLDEAD ML GF+ QI I + + P QV ++SAT P E +
Sbjct: 170 DMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 437 AEEFLHDYIQINIGSLELS 493
+F+ ++I + EL+
Sbjct: 230 TRKFMSKPVRILVKRDELT 248
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Frame = +2
Query: 278 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL-- 451
T L+ LVLDEAD +LDMGF I +II + +RQ ++SAT P EV+ + L
Sbjct: 205 TRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQICLVALRR 264
Query: 452 -HDYIQ-INIGSLE 487
H+++ ++ G++E
Sbjct: 265 DHEFVNCVHEGTIE 278
Score = 41.9 bits (94), Expect = 6e-04
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDG--PIV-LVLAPTRELAQQIQQVAN---EFGQSIHVRNTCIF 176
LLP+I ++ P D+ PI+ LV+ PTRELA Q AN ++ SI V+ +
Sbjct: 109 LLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQ--VVI 166
Query: 177 GGAPKG-PQGRCLERGVEIVIATPGRL 254
GG G Q R +I++ATPGRL
Sbjct: 167 GGTRLGLEQKRMQTNPCQILVATPGRL 193
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 54.8 bits (126), Expect = 7e-08
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 7/85 (8%)
Frame = +2
Query: 254 LDFLEKE---TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPRE 424
LD +E + T+ L ++DEAD +LD+GF+ + KII+ + RQ L++SAT P+E
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKE 575
Query: 425 VQNLAEEFL---HDYIQ-INIGSLE 487
V+ +++ L H YI I +G +E
Sbjct: 576 VRRVSQLVLKRDHSYIDTIGLGCVE 600
Score = 37.9 bits (84), Expect = 0.009
Identities = 35/88 (39%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +3
Query: 15 LLPAIVHII---NQPRLLRDDGPI-VLVLAPTRELAQQIQQVANEF---GQSIHVRNTCI 173
LLPAI ++ N + + PI VL+L PTRELA QI I V+ T I
Sbjct: 430 LLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQ-TLI 488
Query: 174 FGGAPKGPQGRCLERGVEIVIATPGRLL 257
G + Q R +I+IATPGRLL
Sbjct: 489 GGTRFRLDQQRLESEPCQILIATPGRLL 516
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 54.8 bits (126), Expect = 7e-08
Identities = 29/65 (44%), Positives = 37/65 (56%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 260
LVLAPTRELAQQI++V G V+ GG R L+ GV +V+ TPGR+
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 261 FWRRR 275
RR+
Sbjct: 171 MLRRQ 175
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/79 (34%), Positives = 42/79 (53%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D L +++ VLDEAD ML GF+ QI I + + P QV ++SAT P E +
Sbjct: 170 DMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229
Query: 437 AEEFLHDYIQINIGSLELS 493
+F+ ++I + EL+
Sbjct: 230 TRKFMSKPVRILVKRDELT 248
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 54.4 bits (125), Expect = 1e-07
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 7/85 (8%)
Frame = +2
Query: 254 LDFLEKE---TTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPRE 424
LD +E + T+ L ++DEAD +LD+GF + KII+ + RQ L++SAT P+E
Sbjct: 469 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKE 528
Query: 425 VQNLAEEFL---HDYIQ-INIGSLE 487
V+ +++ L H YI I +G +E
Sbjct: 529 VRRVSQLVLKRDHSYIDTIGLGCVE 553
Score = 40.7 bits (91), Expect = 0.001
Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Frame = +3
Query: 15 LLPAIVHII---NQPRLLRDDGPI-VLVLAPTRELAQQIQQVAN---EFGQSIHVRNTCI 173
LLPAI ++ N + + PI L+L PTRELA QI +F I V+ T I
Sbjct: 383 LLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ-TLI 441
Query: 174 FGGAPKGPQGRCLERGVEIVIATPGRLL 257
G K Q R +I+IATPGRLL
Sbjct: 442 GGTRFKLDQQRLESEPCQILIATPGRLL 469
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +3
Query: 15 LLPAIVHII-NQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIH-VRNTCIFGGAP 188
L P I H+ + P++ R G LV+ PTREL Q+ + + H + + GG
Sbjct: 85 LAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEK 144
Query: 189 KGPQGRCLERGVEIVIATPGRLL 257
K + L +G+ I+IATPGRLL
Sbjct: 145 KAKEKARLRKGISILIATPGRLL 167
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain;
identical to cDNA DEAD box RNA helicase, RH26 GI:3776024
Length = 850
Score = 53.2 bits (122), Expect = 2e-07
Identities = 56/211 (26%), Positives = 86/211 (40%), Gaps = 6/211 (2%)
Frame = +2
Query: 278 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL-H 454
T L LVLDEAD +LDMGF I +II + RQ ++SAT P EV+ + L
Sbjct: 533 TRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQICHVALKR 592
Query: 455 DYIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLR-YLQRR--XPKLLYC*NQKX 625
D+ IN H + + + R + LH L+ ++ +++C
Sbjct: 593 DHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMV 652
Query: 626 GRRHMXGDXPCXLAC-PRHPRGXEPAGPRL-CAEPVPQXAAAILVATTXRPXDSMLEDLK 799
R + D L+ R +P R ++ + A ILV + D+
Sbjct: 653 TR--LVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVS 710
Query: 800 FVDKLXLSQ*FGGYVXRXGRTGXVPXNREGL 892
V ++ L Y+ R GRTG EG+
Sbjct: 711 LVVQMGLPSDREQYIHRLGRTGRKGKEGEGV 741
Score = 46.0 bits (104), Expect = 3e-05
Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGP---IVLVLAPTRELAQQIQQVAN---EFGQSIHVRNTCIF 176
LLPAI +I P RD IVLV+ PTRELA Q AN ++ SI V+ +
Sbjct: 437 LLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQ--VVI 494
Query: 177 GGAPKGPQGRCLERG-VEIVIATPGRL 254
GG + R ++ +I++ATPGRL
Sbjct: 495 GGTKLPTEQRRMQTNPCQILVATPGRL 521
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 257 DFLEK-ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQN 433
D +E+ E + R L+LDEADR+L+MGF+ Q+ II ++ R+ ++SAT V+
Sbjct: 155 DIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEE 214
Query: 434 LAEEFLHDYIQINI 475
LA+ L + +++ +
Sbjct: 215 LAKAGLRNPVRVEV 228
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSI-HVRNTCIFGGAP-KGPQGRCLERGVEIVIATPGRL 254
++++PTREL+ QI VA F ++ +V + + GG K E G ++I TPGRL
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/67 (37%), Positives = 43/67 (64%)
Frame = +2
Query: 281 NLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDY 460
+L+ YLVLDEADR+L+ FE + +I+E+I +R+ ++SAT ++V+ L L +
Sbjct: 161 SLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNP 220
Query: 461 IQINIGS 481
++I S
Sbjct: 221 VKIEAAS 227
Score = 44.8 bits (101), Expect = 8e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Frame = +3
Query: 15 LLPAIVHII--NQPRLLRDDGP--IVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGG 182
+L A++ + ++P+ R P VL+PTRELA QI + G I +R + GG
Sbjct: 67 ILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126
Query: 183 APKGPQGRCLERGVEIVIATPGRL 254
+ Q L + +++ATPGRL
Sbjct: 127 IDRMQQTIALGKRPHVIVATPGRL 150
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/70 (37%), Positives = 44/70 (62%)
Frame = +2
Query: 272 ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL 451
E + R L+LDEADR+LDMGF+ Q+ II ++ R+ ++SAT + V +LA+ L
Sbjct: 161 EFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGL 220
Query: 452 HDYIQINIGS 481
+ +++ G+
Sbjct: 221 RNAMEVISGA 230
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSI-HVRNTCIFGGAP-KGPQGRCLERGVEIVIATPGRL 254
++++PTREL+ QI +VA F ++ +V + + GG + E G ++I TPGRL
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRL 153
Query: 255 LIFWRRRQ 278
+R +
Sbjct: 154 SDMMKRME 161
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGR 251
P +VL PTREL++Q+ +VA R+ + GG+ PQ L +++V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 252 LL 257
+L
Sbjct: 250 IL 251
Score = 39.1 bits (87), Expect = 0.004
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Frame = +2
Query: 299 YLVLDEADRMLDMGFEPQIRKIIEQIRP------DR--QVLMWSATWPREVQNLAEE 445
YLVLDEAD M D GF P+IRK + + D+ Q ++ +AT VQ L +E
Sbjct: 266 YLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDE 322
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 51.6 bits (118), Expect = 7e-07
Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Frame = +2
Query: 302 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHD--YIQIN 472
L+LDEADR+LD F+ Q+ II Q+ RQ L++SAT ++V++LA L D YI ++
Sbjct: 222 LILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVH 280
Score = 35.9 bits (79), Expect = 0.037
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 27 IVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGR 206
I+ +++ R +DG ++++PTRELA Q V N+ G+ + GG +
Sbjct: 129 ILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEK 188
Query: 207 CLERGVEIVIATPGRLL 257
+ I++ PGRLL
Sbjct: 189 ERVHEMNILVCAPGRLL 205
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 51.6 bits (118), Expect = 7e-07
Identities = 26/79 (32%), Positives = 45/79 (56%)
Frame = +2
Query: 257 DFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNL 436
D +++ + + LVLDE+D ML G + QI + + D QV + SAT P+E+ +
Sbjct: 153 DMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEM 212
Query: 437 AEEFLHDYIQINIGSLELS 493
E+F+ D ++I + EL+
Sbjct: 213 TEKFMTDPVRILVKPDELT 231
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +3
Query: 78 VLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRL 254
VLVL+P+RELA Q ++ G +++ GG G + LERGV V TPGR+
Sbjct: 93 VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKKLERGVHAVSGTPGRV 151
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 615 TKRXVDDICXXXXXXXXXXXXIHGDXNQQDRDYVLNQFRN 734
T++ VD + +HGD Q++RD ++NQFR+
Sbjct: 270 TRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRS 309
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 51.6 bits (118), Expect = 7e-07
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +2
Query: 290 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAE 442
R +LVLDEADR+LD+GF+ ++R I + + RQ L++SAT +Q L E
Sbjct: 203 RTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +3
Query: 51 RLLRDD-GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVE 227
RL D G LV+ PTRELA Q+ + G +++R + I GG Q L
Sbjct: 119 RLAEDPYGVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPH 178
Query: 228 IVIATPGRLLI 260
IVI TPGR+ +
Sbjct: 179 IVITTPGRIKV 189
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +2
Query: 266 EKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEE 445
E + LR Y+V DEAD + MGF Q+ +I+ Q+ +RQ L++SAT P + A+
Sbjct: 165 EVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKA 224
Query: 446 FLHD 457
L +
Sbjct: 225 GLRE 228
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/63 (38%), Positives = 38/63 (60%)
Frame = +3
Query: 69 GPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 248
G L+L+PTR+LA+Q + E G+ +R + + GG Q L +G +++IATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 249 RLL 257
RL+
Sbjct: 158 RLM 160
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 50.4 bits (115), Expect = 2e-06
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Frame = +2
Query: 254 LDFLEKETTNL-RRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
LD LE + + +LV+DEADR+L+ FE ++KI+ + RQ ++SAT +V+
Sbjct: 288 LDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVE 347
Query: 431 NLAEEFLHD--YIQINIGSLELSANHNISRLLMFVRNGRRMI 550
+LA L YI ++ G E++ N + + V + R++
Sbjct: 348 DLARVSLTSPVYIDVDEGRKEVT-NEGLEQGYCVVPSAMRLL 388
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
L+PA V ++ + + +G VLV+ PTRELA Q VA E + + GG +
Sbjct: 209 LIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRK 267
Query: 195 PQGRCLERGVEIVIATPGRLL 257
+ L +GV +++ATPGRLL
Sbjct: 268 TEAEILAKGVNLLVATPGRLL 288
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +2
Query: 272 ETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL 451
E + R L+LDEADR+LDMGF+ Q+ II ++ R+ ++SAT + V +LA+ L
Sbjct: 154 EFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGL 213
Query: 452 HD 457
+
Sbjct: 214 RN 215
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRLLI 260
++++PTREL+ QI +VA VR + E G ++I TPGRL
Sbjct: 95 VIISPTRELSAQIHKVARA------VRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSD 148
Query: 261 FWRRRQ 278
+R +
Sbjct: 149 MMKRME 154
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKG 194
L+PA V ++ + R +G V+V+ PTRELA Q + VA E + + + GG +
Sbjct: 144 LIPA-VELLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRR 202
Query: 195 PQGRCLERGVEIVIATPGRLL 257
+ + + G +VIATPGRLL
Sbjct: 203 SEAQRIASGSNLVIATPGRLL 223
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/58 (36%), Positives = 37/58 (63%)
Frame = +2
Query: 302 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
LV+DEADR+L+ FE + KI++ + RQ ++SAT +V++LA L + +++
Sbjct: 240 LVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +2
Query: 278 TNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL-- 451
T L LVLDEAD +LDMGF +I +II + RQ ++SAT EV+ + L
Sbjct: 231 TRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQICHVALKR 290
Query: 452 -HDYI 463
H+++
Sbjct: 291 DHEFV 295
Score = 45.2 bits (102), Expect = 6e-05
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Frame = +3
Query: 15 LLPAIVHIINQPRLLRDDGP---IVLVLAPTRELAQQIQQVAN---EFGQSIHVRNTCIF 176
LLP+I +I P RD+ IVLV+ PTRELA Q AN ++ SI V+ +
Sbjct: 135 LLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQ--VVI 192
Query: 177 GGAPKGPQGRCLERG-VEIVIATPGRL 254
GG + R L++ +I++ATPGRL
Sbjct: 193 GGTKLPTEQRRLQKSPCQILVATPGRL 219
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 47.6 bits (108), Expect = 1e-05
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 4/214 (1%)
Frame = +2
Query: 263 LEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQVLMWSATWPREVQNLA 439
++ + +L + YLVLDE+D++ + QI +++ P ++SAT P V+ LA
Sbjct: 273 IKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELA 332
Query: 440 EEFLHDYIQINIGSLELSANHNISRLLMFVRNGRRMIN*LHCSLRYLQRRXPKLLYC*NQ 619
+HD +++ IG + +A+ + + L+F + + L S + + P +L
Sbjct: 333 RSIMHDAVRVIIGR-KNTASETVKQKLVFAGSEEGKLLALRQS--FAESLNPPVLIFVQS 389
Query: 620 KXGRRHMXGDXPCXLACPRHPRGXEPAGPRLCAEPVPQXAAA---ILVATTXRPXDSMLE 790
K + + + C P G R V Q A +L+AT +
Sbjct: 390 KERAKELYDELKCENIRAGVIHSDLPPGER--ENAVDQFRAGEKWVLIATDVIARGMDFK 447
Query: 791 DLKFVDKLXLSQ*FGGYVXRXGRTGXVPXNREGL 892
+ V Y+ R GR+G + E +
Sbjct: 448 GINCVINYDFPDSASAYIHRIGRSGRAGRSGEAI 481
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/94 (32%), Positives = 44/94 (46%)
Frame = +3
Query: 18 LPAIVHIINQPRLLRDDGPIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGP 197
LP + ++ +P+ R VL+L PTRELA QI + Q ++ I GG
Sbjct: 223 LPTLERLLFRPK--RVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVRE 280
Query: 198 QGRCLERGVEIVIATPGRLLIFWRRRQRTCADAL 299
Q L +IV+ATPGR++ R D L
Sbjct: 281 QEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDL 314
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/57 (35%), Positives = 36/57 (63%)
Frame = +2
Query: 302 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQIN 472
L+LDEADR+L GF +I +++ RQ +++SAT EV+ L + L+ ++++
Sbjct: 317 LILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLS 373
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/75 (26%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
L ++ +L+ + +LDE D+ML+ + +++I + D+QV+M+SAT +E++
Sbjct: 178 LALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237
Query: 431 NLAEEFLHDYIQINI 475
+ ++F+ D ++I +
Sbjct: 238 PVCKKFMQDPMEIYV 252
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/75 (26%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
L ++ +L+ + +LDE D+ML+ + +++I + D+QV+M+SAT +E++
Sbjct: 95 LALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 154
Query: 431 NLAEEFLHDYIQINI 475
+ ++F+ D ++I +
Sbjct: 155 PVCKKFMQDPMEIYV 169
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/75 (26%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = +2
Query: 254 LDFLEKETTNLRRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQVLMWSATWPREVQ 430
L ++ +L+ + +LDE D+ML+ + +++I + D+QV+M+SAT +E++
Sbjct: 178 LALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 237
Query: 431 NLAEEFLHDYIQINI 475
+ ++F+ D ++I +
Sbjct: 238 PVCKKFMQDPMEIYV 252
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQS-IHVRNTCIFGGAPKGPQGRCLERGVEIVIATPG 248
P V+VL PT ELA Q+ +S + R+ + GG + Q LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 249 R 251
R
Sbjct: 512 R 512
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.6 bits (103), Expect = 5e-05
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQGRCLERGVEIVIATPGRL 254
L++ PTRELA Q+ + +++ V+ I GG Q R L+ EIV+ATPGRL
Sbjct: 283 LIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRL 340
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 245 W*TLDFLEKETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIE 370
W + EK L ++ VLDEADRM++ G +++ I++
Sbjct: 341 WELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 302 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFLHDYIQINI 475
LVLDEAD +L G+E +R + I Q L+ SAT +V+ L + LH+ I + +
Sbjct: 204 LVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL 261
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.085
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +2
Query: 284 LRRCTYLVLDEADRMLDM-GFEP---QIRKIIEQIRPDRQVLMWSATWPREVQNLAEEFL 451
L LV DEAD ML GF +I K I ++ P+ QVL++SAT+ V++ +
Sbjct: 236 LNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTV 295
Query: 452 HDYIQINIGSLELS 493
D Q+ + +L+
Sbjct: 296 KDPNQLFVKREDLA 309
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 72 PIVLVLAPTRELAQQIQQVANEFGQSIHVRNTCIFGGAPKGPQG--RCLERGVEIVIATP 245
P L + PTRELA Q +V + G+ + + +G R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 246 GRL 254
G L
Sbjct: 223 GTL 225
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 81 LVLAPTRELAQQIQQVANEFGQSIHVRNT-CIFGGAPKGPQGRCLERG-VEIVIATPGRL 254
+++AP+REL QI + + +H R + GGA + Q L++ IV+ TPGR+
Sbjct: 195 MIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRI 254
>At3g07040.1 68416.m00836 disease resistance protein RPM1
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPM1 (gi:1361985)
Length = 926
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 87 LAPTRELAQQIQQVANEFGQSIHVRNTC 170
+A TR+LA QI+ + +EFG IH +C
Sbjct: 68 VANTRDLAYQIEDILDEFGYHIHGYRSC 95
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 284 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQ 391
LR Y+V DEAD +L F+ QI ++I +R D +
Sbjct: 235 LRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEK 270
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 284 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 397
L++ LVLDEA +D + I+KII Q DR V+
Sbjct: 938 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVV 975
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 284 LRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVL 397
L++ LVLDEA +D + I+KII Q DR V+
Sbjct: 1391 LKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVV 1428
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA
repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Frame = -2
Query: 341 SPCPTFYQPHPAPNKCIGAGSLSPSPKNQESTRSSNNNFHSPLKT--SALWSLWSTTKDT 168
SP Y+P NK P P E S ++F +PL +W KDT
Sbjct: 517 SPAMDKYRPSVNDNKKCSDRKGDPLPNRLEFDASDPSSFVAPLDNIEGTVWQYVPGIKDT 576
Query: 167 SVPHVDALTKFI 132
PH +FI
Sbjct: 577 LYPHQQEGFEFI 588
>At1g18550.1 68414.m02314 kinesin motor protein-related contains
similarity to kinesin-related protein GI:4493964 from
[Plasmodium falciparum]
Length = 799
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -2
Query: 299 KCIGAGSLSPSPKNQESTRSSNNNFHSPLKTSALWSLWSTTKDTSVPHVD 150
+ + GSL P K +E +S ++ F SP+ + S W T + P +D
Sbjct: 647 RIVTRGSLRPKEKEKE-LKSPSHRFASPVAAAKKRSFWDITVANTSPALD 695
>At5g41070.1 68418.m04992 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 393
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 350 EARSPCPTFYQPHPAPNKCIGAGSLSPSPKNQESTRSSNNNFHSP 216
+ RS P F P P PN + SLS S S+ +S + ++P
Sbjct: 319 QMRSVIPVFAAPPPKPNPNLNPSSLSSSVNEFTSSNNSCSVLNTP 363
>At1g79250.1 68414.m09239 protein kinase, putative similar to viroid
symptom modulation protein/dual-specificity protein
kinase [Lycopersicon esculentum] gi|7672777|gb|AAF66637
Length = 555
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -2
Query: 323 YQPHPAPNKCIGAGSLSPSPKNQESTRSSNNNFHSPLKTSALW-SLWSTTKDTSVPH 156
++P+P+P GS ++ +T+ +NNN ++ S+ S+ ST+ + S PH
Sbjct: 65 HRPNPSPKIPSSPGSNMTESQSNLNTKPNNNNSNNNSNMSSRSNSIESTSSNPSKPH 121
>At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containing
protein similar to BPM [Hordeum vulgare] GI:20513851
Length = 968
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 323 YQPHPAPNKCIGAGSLSPSPKNQESTRSSNNNF 225
YQ +PN C+ +L+P+ + + + NNNF
Sbjct: 394 YQQLDSPNYCLNNYALNPAVASMMANQLGNNNF 426
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,894,311
Number of Sequences: 28952
Number of extensions: 428460
Number of successful extensions: 1790
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1753
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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