Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0652
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   3.3  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   4.4  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    26   5.8  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   5.8  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   5.8  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   7.7  

>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -3

Query: 97  NSKERSLKL--ESRKTALTRSLRQTDKYIAS 11
           N +E  LKL  +++ T +T  LRQTD Y+ S
Sbjct: 329 NDEEAYLKLIDQAKDTRITHLLRQTDHYLDS 359


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 578  SPSHVQTRQAFYFHENMGNKFQKPVP 655
            S   + T+ A +F+    N FQKPVP
Sbjct: 993  STQDLNTQDAQFFYSLCSNPFQKPVP 1018


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 551 FGEYAIFVIAISLSPSPVPCRRTKMPLSHGPSSFN*IFEC 432
           F   A+  I+  L+  P+   +T+M LS G S +N  F+C
Sbjct: 12  FAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDC 51


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
 Frame = +1

Query: 673 FXPWFFRLNLGAGQKPV----CPPM 735
           F PW+FR  + AG KP      PPM
Sbjct: 429 FEPWYFRQVIKAGNKPAPEARLPPM 453


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 596 TRQAFYFHENMGNKFQKPVP*-MXLVTSXPGFSV*TLGLARSQFVLQWKRTLEITMDKD* 772
           ++   +F  ++ N    P+P  +  +   P F + T G++  ++   +  T+  T+DKD 
Sbjct: 368 SKHIIFFDLDLLNNISFPIPRSINAIQQLPCFLIDT-GISAKEYDFSYDGTVFATVDKDA 426

Query: 773 FNXVSLGPTT*LFEPSQR 826
              +   PTT    P +R
Sbjct: 427 LIKIYTVPTTFPSTPDKR 444


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 520 FRYRPPQFHAGELKCHFLT 464
           F+YRPP  H GE K   LT
Sbjct: 280 FQYRPPIVHRGEDKHRILT 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,755,480
Number of Sequences: 5004
Number of extensions: 82574
Number of successful extensions: 184
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)