Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0652
(846 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059 33 0.22
05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870 30 2.0
10_08_0516 + 18478743-18478830,18478940-18479319,18479406-184796... 29 4.7
08_02_0017 - 11264038-11264260,11264376-11264653 29 4.7
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 29 4.7
01_01_1078 + 8489872-8490168,8490280-8490462,8490667-8490908,849... 29 4.7
01_01_1077 + 8485655-8486134,8486423-8486554,8487725-8487966,848... 29 4.7
03_06_0541 - 34607071-34607353,34608167-34608399,34609093-346092... 29 6.2
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831 28 8.1
>03_06_0542 - 34611864-34612364,34613932-34614132,34614745-34615059
Length = 338
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = +2
Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDFSYMVFLNFWYSWRYQILEFKKDYWWHSPLNMRG 364
H+ ++ NG + G+ + F WYSWR+Q+ + ++RG
Sbjct: 13 HRTVEANGISIHVAEAGGEGGDGAAVLFLHGFPELWYSWRHQMEHLAGRGFRCLAPDLRG 72
Query: 365 YGD 373
YGD
Sbjct: 73 YGD 75
>05_03_0253 - 11014334-11014592,11015061-11015296,11015370-11015870
Length = 331
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDFSYMVFLNFWYSWRYQILEFKKDYWWHSPLNMRG 364
H+ + NG + + +AG P A F WY+WR+Q+ + ++RG
Sbjct: 14 HRTVDANGLRMHVA-EAGPPG-APPVLLLHGFPQVWYAWRHQMRALADAGYRAVAPDLRG 71
Query: 365 YGD 373
YGD
Sbjct: 72 YGD 74
>10_08_0516 +
18478743-18478830,18478940-18479319,18479406-18479641,
18480280-18480538
Length = 320
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +2
Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDFSYMVFLN----FWYSWRYQILEFKKDYWWHSPL 352
H ++ + G I + G +L + +VFL+ WYSWR+Q+L +
Sbjct: 7 HLHLPIRGLNLHIA-QVGKGEISLYELGTVVFLHGFPEIWYSWRHQMLAAAAAGYRAVAP 65
Query: 353 NMRGYG 370
+ RGYG
Sbjct: 66 DWRGYG 71
>08_02_0017 - 11264038-11264260,11264376-11264653
Length = 166
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 749 PRFVSIGGQTGFWPAPRFRRKNQGKKLPXTFKE 651
P VS+G + G AP FRR+ QG P KE
Sbjct: 2 PTEVSLGQRIGAREAPGFRRRAQGATWPKRSKE 34
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 670 YQXHLRNWLLKFVSHIFVEIESLPGLNMAGAKHNQCAELFS 548
Y+ HL NW ++ SH S +N AG CA L S
Sbjct: 845 YRRHLENWTWRWTSHGHPSAPSAVAMNAAGG-DKSCATLGS 884
>01_01_1078 +
8489872-8490168,8490280-8490462,8490667-8490908,
8490988-8491240
Length = 324
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 278 FLNFWYSWRYQILEFKKDYWWHSPLNMRGYGD 373
F WYSWR+Q+ + ++RGYGD
Sbjct: 38 FPELWYSWRHQMRALAARGFRAVAPDLRGYGD 69
>01_01_1077 +
8485655-8486134,8486423-8486554,8487725-8487966,
8488254-8488500
Length = 366
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 278 FLNFWYSWRYQILEFKKDYWWHSPLNMRGYGD 373
F WYSWR+Q+ + ++RGYGD
Sbjct: 38 FPELWYSWRHQMRALAARGFRAVAPDLRGYGD 69
>03_06_0541 -
34607071-34607353,34608167-34608399,34609093-34609275,
34609357-34609659
Length = 333
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDFSYMV-FLNFWYSWRYQILEF-KKDYWWHSPLNM 358
H+ ++ NG + +AG S ++ F WYSWR+Q+ + Y +P ++
Sbjct: 9 HRTVEANGISMHVA-EAGPGSGTAPAVLFVHGFPELWYSWRHQMGHLAARGYRCVAP-DL 66
Query: 359 RGYG 370
RGYG
Sbjct: 67 RGYG 70
>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
Length = 512
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -3
Query: 805 LRGWPQGNXVKLIFIHGYLQGSFPLEDKLASGQPQGLDGKTRXRSYQXHLRNWLLKFVSH 626
+ G+ + +L I +L G F L + + P+ D H WL +FVS
Sbjct: 442 IEGYSEQERAQLALIQRFLSGGFNLGEPPSQSPPRCADSYIIDTMKDLHQLPWLERFVSV 501
Query: 625 I 623
I
Sbjct: 502 I 502
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,382,202
Number of Sequences: 37544
Number of extensions: 553271
Number of successful extensions: 1095
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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