Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0652
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)                 32   0.51 
SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)        30   2.1  
SB_11360| Best HMM Match : PDZ (HMM E-Value=0)                         29   3.6  
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_35110| Best HMM Match : LRR_1 (HMM E-Value=3.9e-09)
          Length = 546

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 23/85 (27%), Positives = 38/85 (44%)
 Frame = -3

Query: 676 RSYQXHLRNWLLKFVSHIFVEIESLPGLNMAGAKHNQCAELFSGNTPFSL*PFRYRPPQF 497
           R+Y+       LK+++    EI S+P L + GA+  Q  +L S   P    P    P Q 
Sbjct: 130 RTYRTITGITALKYLNLEHNEITSIPHLRLLGARLRQSEDLGSKGDPTE--PTESSPQQE 187

Query: 496 HAGELKCHFLTDPAPLTKYLNVVNG 422
           H  +++ H      P  + L ++ G
Sbjct: 188 HPDDVQVHEALPAVPRKRNLLMLEG 212


>SB_39788| Best HMM Match : Ricin_B_lectin (HMM E-Value=6.4e-14)
          Length = 784

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
 Frame = +2

Query: 164 SDPKYGIHKNI--KVNGHKTTITLKAGDPSEALNDFSYMVFLNFWYSWRYQILEFKKDYW 337
           SD K    KN   KVNGHK T+     D SE  N+   +  +N   S  +Q+L  K+   
Sbjct: 526 SDEKLVARKNSRSKVNGHKETVDKAINDLSEKFNE--SLQRMNNKISSLHQVLHEKRSSM 583

Query: 338 WHSPLNMRGYGDFRKS*RCLRPNKLNSGSIDDI 436
                 +R   D  +S      N L   S  DI
Sbjct: 584 ADKISELRFTSDKSESNTSTPTNSLTFNSKGDI 616


>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 625

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = -3

Query: 616 EIESLPGLNMAGAKHNQCAELFSGNTPFSL*PFRYRPPQFHAGELKCHFLTDPAPLTKYL 437
           +I+++  +++  A H Q A    G         +Y+P +++  E K H L +   +T   
Sbjct: 230 QIKAVNDVDLTNATHEQAAAALKGAGSTVTITAQYKPEEYNQFETKIHHLREKMMVTSNQ 289

Query: 436 NVVNGAR 416
            VV   +
Sbjct: 290 GVVTSVK 296


>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 506 SPVPCRRTKMPLSHGPSSFN 447
           SP P RR +M LSH PS+ N
Sbjct: 365 SPAPTRREEMMLSHSPSNGN 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,294,097
Number of Sequences: 59808
Number of extensions: 605535
Number of successful extensions: 1091
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)