Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0652
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.2  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 171 PSMEFTRISKLMGIKLPLH*KP 236
           PS EF++ISK+     PL  KP
Sbjct: 2   PSSEFSKISKVDRSTSPLPRKP 23


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 742 SFPLEDKLASGQPQG 698
           SFP    L  GQPQG
Sbjct: 620 SFPARLSLPKGQPQG 634


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 247 GRVAGFQCNGSFMPINF 197
           G V+ +Q NG F  +NF
Sbjct: 168 GDVSNYQANGEFDLVNF 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,148
Number of Sequences: 438
Number of extensions: 6028
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)