Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0652
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to ...    37   0.015
At2g26750.1 68415.m03208 epoxide hydrolase, putative strong simi...    36   0.034
At3g51000.1 68416.m05584 epoxide hydrolase, putative similar to ...    35   0.078
At4g02340.1 68417.m00318 epoxide hydrolase, putative similar to ...    33   0.18 
At3g05600.1 68416.m00622 epoxide hydrolase, putative similar to ...    33   0.24 
At2g26740.1 68415.m03207 epoxide hydrolase, soluble (sEH) identi...    32   0.42 
At4g15955.1 68417.m02422 epoxide hydrolase-related similar to ep...    31   0.96 
At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase fa...    28   6.8  
At5g56325.1 68418.m07030 hypothetical protein                          28   9.0  

>At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to
           epoxide hydrolase [Solanum tuberosum] GI:407944;
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 375

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDFSYMV-FLNFWYSWRYQILEFKKDYWWHSPLNMR 361
           HK +KVNG    +  K G  S       ++  F   WY+WR+Q++      +     ++R
Sbjct: 56  HKTLKVNGINMHVAEKPGSGSGEDPIILFLHGFPELWYTWRHQMVALSSLGYRTIAPDLR 115

Query: 362 GYGD 373
           GYGD
Sbjct: 116 GYGD 119


>At2g26750.1 68415.m03208 epoxide hydrolase, putative strong
           similarity to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 320

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDFSYMVFLNFWYSWRYQILEFKKDYWWHSPLNMRG 364
           H+N++ NG    + ++   PS+         F   WYSWR+QI       +     ++RG
Sbjct: 3   HRNVRGNGIDIHVAIQG--PSDGTIVLLLHGFPELWYSWRHQISGLAARGYRAVAPDLRG 60

Query: 365 YGD 373
           YGD
Sbjct: 61  YGD 63


>At3g51000.1 68416.m05584 epoxide hydrolase, putative similar to
           epoxide hydrolase [Glycine max] GI:2764806; contains
           Pfam profile PF00561: hydrolase, alpha/beta fold family
          Length = 323

 Score = 34.7 bits (76), Expect = 0.078
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 188 KNIKVNGHKTTITLKAGDPSEALNDFSYMVFLNFWYSWRYQILEFKKDYWWH--SPLNMR 361
           K IK NG    +  K GD    L    +  F   WYSWR+QI +F   + +H  +P ++R
Sbjct: 8   KKIKTNGIWLNVAEK-GDEEGPLVLLLHG-FPETWYSWRHQI-DFLSSHGYHVVAP-DLR 63

Query: 362 GYGD 373
           GYGD
Sbjct: 64  GYGD 67


>At4g02340.1 68417.m00318 epoxide hydrolase, putative similar to
           epoxide hydrolases from Glycine max GI:2764806, Solanum
           tuberosum GI:407938; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 324

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 278 FLNFWYSWRYQILEFKKDYWWHSPLNMRGYGD 373
           F + WYSWR+Q++ F    +     ++RGYGD
Sbjct: 33  FPDLWYSWRHQLVSFAALGYRAIAPDLRGYGD 64


>At3g05600.1 68416.m00622 epoxide hydrolase, putative similar to
           epoxide hydrolase from [Glycine max] GI:2764806,
           [Arabidopsis thaliana] GI:1109600; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 331

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +2

Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDFSYMVFLNFWYSWRYQILEFKKDYWWHSPLNMRG 364
           H+ + VNG   T+ +    P E         F + WY+WR+QI       +     ++RG
Sbjct: 6   HRMVSVNG--ITMHIAEKGPKEGPVVLLLHGFPDLWYTWRHQISGLSSLGYRAVAPDLRG 63

Query: 365 YGD 373
           YGD
Sbjct: 64  YGD 66


>At2g26740.1 68415.m03207 epoxide hydrolase, soluble (sEH) identical
           to ATsEH [Arabidopsis thaliana] GI:1109600
          Length = 321

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +2

Query: 197 KVNGHKTTITLKAGDPSEALNDFSYMVFLNFWYSWRYQILEFKKDYWWHSPLNMRGYGD 373
           KV G+   I +    PS+         F   WYSWR+QI       +     ++RGYGD
Sbjct: 5   KVRGNGIDIHVAIQGPSDGPIVLLLHGFPELWYSWRHQIPGLAARGYRAVAPDLRGYGD 63


>At4g15955.1 68417.m02422 epoxide hydrolase-related similar to
           epoxide hydrolase GI:1109600 from [Arabidopsis thaliana]
          Length = 178

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
 Frame = +2

Query: 185 HKNIKVNGHKTTITLKAGDPSEALNDF---SYMVFLN----FWYSWRYQILEFKKDYWWH 343
           H  +KVNG   T+ +    PS A N       ++FL+     WY+WR+Q++      +  
Sbjct: 7   HSFVKVNG--ITMHVAEKSPSVAGNGAIRPPVILFLHGFPELWYTWRHQMVALSSLGYRT 64

Query: 344 SPLNMRGYGD 373
              ++RGYGD
Sbjct: 65  IAPDLRGYGD 74


>At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase
           family protein / NAPRTase family protein contains Pfam
           domain PF04095: Nicotinate phosphoribosyltransferase
           (NAPRTase)
          Length = 557

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 760 HGYLQGSFPLEDKLASGQPQGLDGKTRXRSYQXHLRNWLLK 638
           H Y+  SF   D++     +  DGKT    +  H++ WL K
Sbjct: 222 HAYVS-SFMSTDEIVDKVLRSADGKTTCEDFVSHVQTWLKK 261


>At5g56325.1 68418.m07030 hypothetical protein
          Length = 264

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 434 CRQWSQNLTC*AGDIFNSFGNLRILACST 348
           C   S+N++  AG+IFN   +LR+  C T
Sbjct: 120 CLPTSKNVSYPAGNIFNRLVHLRLCTCET 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,774,043
Number of Sequences: 28952
Number of extensions: 451312
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)