Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0651
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...   120   2e-28
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...   119   6e-28
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    28   2.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   2.7  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    26   8.2  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score =  120 bits (290), Expect = 2e-28
 Identities = 62/96 (64%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
 Frame = +1

Query: 514 FSLYPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFGXP-P 690
           F+LYPQFMY+LRRS FLQVFNNSPDET FYRHML  ED+  SLIMIQP L S+SF  P  
Sbjct: 568 FTLYPQFMYYLRRSPFLQVFNNSPDETAFYRHMLNHEDVNNSLIMIQPTLQSFSFEHPGG 627

Query: 691 EPVLLDTSSIQADRI-L*XTLLSNIIYHGETIAQXR 795
            PVLLD  S++ D I L  T    +I+HG+TIAQ R
Sbjct: 628 VPVLLDAVSVKPDVILLLDTFFHILIFHGDTIAQWR 663



 Score =  107 bits (258), Expect = 2e-24
 Identities = 52/81 (64%), Positives = 61/81 (75%)
 Frame = +2

Query: 257 SSGQRRVRVTTVARNWGDAAVSLHHIAAGFDQEAAAVVMARLVVYRAEIEDGPDVLRWLD 436
           SS   R+RVTTVAR + D    L  I   FDQEAAAV MAR+  ++AE++DGPDVLRW D
Sbjct: 484 SSNTFRLRVTTVARAFADGGSPL--IVNSFDQEAAAVAMARIAAFKAEVDDGPDVLRWTD 541

Query: 437 RMLIRLCQKFGEYGKDDPNSF 499
           RMLI+LCQKF EY KDDP+SF
Sbjct: 542 RMLIKLCQKFAEYRKDDPSSF 562



 Score = 99.5 bits (237), Expect = 6e-22
 Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   FNGTLEVKCSRELKISGAIGSCVSLNVKGPCVSDQEVGMGNTCQWKLCTFTPSTTMSIFF 182
           FN T+EV  ++ELKISG IG  VSLN K   V D E+G+GNT  WK+C  +P +T +I+F
Sbjct: 398 FNATMEVLTTKELKISGLIGHAVSLNKKSQNVGDIEIGLGNTNSWKMCGISPKSTYAIYF 457

Query: 183 EVANQASTVPQG-GRGCVQFITQYQ 254
           EVA Q+++ PQG  RG VQ++T YQ
Sbjct: 458 EVATQSASAPQGDSRGLVQYLTLYQ 482



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 738 LXDTSFKYYISRRDD-STXAGPA*QDMPEYENFAQLLRAPXDDAQEIL 878
           L DT F   I   D  +       Q+ PEY+N  +LL AP  +A E+L
Sbjct: 644 LLDTFFHILIFHGDTIAQWRNAGYQNQPEYQNLKELLEAPRVEAAELL 691


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score =  119 bits (286), Expect = 6e-28
 Identities = 61/97 (62%), Positives = 71/97 (73%), Gaps = 2/97 (2%)
 Frame = +1

Query: 511 NFSLYPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFGXPP 690
           NF+LYPQF++HLRRS FL +FNNSPDET+FYRHML   D+  SLIMIQP L SYSF  P 
Sbjct: 572 NFTLYPQFIFHLRRSPFLHIFNNSPDETSFYRHMLNVADVNDSLIMIQPTLQSYSFNEPE 631

Query: 691 -EPVLLDTSSIQADRI-L*XTLLSNIIYHGETIAQXR 795
             PVLLD+ SI+ D I L  T    +I+HG TIAQ R
Sbjct: 632 GVPVLLDSVSIKPDVILLLDTYFHILIFHGSTIAQWR 668



 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 39/81 (48%), Positives = 57/81 (70%)
 Frame = +2

Query: 257 SSGQRRVRVTTVARNWGDAAVSLHHIAAGFDQEAAAVVMARLVVYRAEIEDGPDVLRWLD 436
           SSG  R+RVTT++R++     +   I+  FDQEAAA ++AR+ +++ + ED   V RW+D
Sbjct: 489 SSGTYRLRVTTISRSF--ITGNAKSISESFDQEAAAAIVARMALFKCQTEDEMSVTRWID 546

Query: 437 RMLIRLCQKFGEYGKDDPNSF 499
           R LIRLCQ F +Y K+DP+SF
Sbjct: 547 RNLIRLCQHFADYRKEDPSSF 567



 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   FNGTLEVKCSRELKISGAIGSCVSLNVKGPCVSDQEVGMGNTCQWKLCTFTPSTTMSIFF 182
           F   LEV  S+ L I G IG+ V  N KG  +SD ++G+  T  WK+   +P ++ +++F
Sbjct: 402 FMANLEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISKTNSWKMAAISPKSSYALYF 461

Query: 183 EVANQASTVPQGGR---GCVQFITQYQ 254
           ++  +    P   R     +QF+T YQ
Sbjct: 462 DLGKEMGN-PNSQRPTQAFIQFLTYYQ 487


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 404 EDGPDVLRWLDRMLIRLCQKFGEYGK 481
           +  P +L WLD M I +C K   Y K
Sbjct: 305 QSNPVLLHWLDEMTILICYKDAAYQK 330


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
 Frame = +1

Query: 571 FNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFGXPPEPV--LLDTSSIQADRIL*X 744
           FN  P     Y +      L  ++ M Q     +    PP  V  LL TS I +  ++  
Sbjct: 543 FNGQP-MALLYFYSFGFGTLQHAMHMTQSAKIGHYMKVPPRLVAALLFTSGIWSS-LVNS 600

Query: 745 TLLSNIIYHGETIAQXRGLRNKTCRSTRTSRN 840
            +   I+YH   +       N TCRS +T  N
Sbjct: 601 AVTGWIMYHVRDVCTSNAENNMTCRSPKTQFN 632


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +1

Query: 532 FMYHLRRSQF----LQVFNNSPDETTFYRHMLM 618
           F Y + RS++      +F+N P E++FYR+ ++
Sbjct: 199 FQYFINRSKWHMKQSNIFSNVPHESSFYRNSII 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,285
Number of Sequences: 5004
Number of extensions: 70262
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)