Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0651
(889 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37) 152 4e-37
SB_39483| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_20004| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.8
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51560| Best HMM Match : ASC (HMM E-Value=1.6) 29 5.0
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0) 29 5.0
SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_46615| Best HMM Match : RMMBL (HMM E-Value=2.5e-15) 28 8.8
>SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)
Length = 875
Score = 152 bits (368), Expect = 4e-37
Identities = 73/97 (75%), Positives = 81/97 (83%), Gaps = 1/97 (1%)
Frame = +1
Query: 508 ENFSLYPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFGXP 687
ENFSLYPQFM+HLRRSQFLQVFNNSPDET +YRH+L RED+T SLIMIQPILYSYSF P
Sbjct: 503 ENFSLYPQFMFHLRRSQFLQVFNNSPDETAYYRHILNREDVTNSLIMIQPILYSYSFQGP 562
Query: 688 PEPVLLDTSSIQADRI-L*XTLLSNIIYHGETIAQXR 795
PEPVLLD+SSI DRI L T +IYHG+TI Q +
Sbjct: 563 PEPVLLDSSSILPDRILLLDTFFQILIYHGDTIFQWK 599
Score = 71.7 bits (168), Expect = 7e-13
Identities = 31/35 (88%), Positives = 32/35 (91%)
Frame = +2
Query: 395 AEIEDGPDVLRWLDRMLIRLCQKFGEYGKDDPNSF 499
AE +DGPDVLRWLDRMLIRLCQKFGEY KDDP SF
Sbjct: 465 AEGDDGPDVLRWLDRMLIRLCQKFGEYNKDDPASF 499
Score = 41.5 bits (93), Expect = 9e-04
Identities = 32/68 (47%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +3
Query: 696 GPPGHVLNTSG---PHT--LXDTSFKYYISRRDDSTXAGPA*-QDMPEYENFAQLLRAPX 857
GPP VL S P L DT F+ I D A Q+ PEYE+F QLL+AP
Sbjct: 561 GPPEPVLLDSSSILPDRILLLDTFFQILIYHGDTIFQWKKAGYQEAPEYESFRQLLQAPV 620
Query: 858 DDAQEILQ 881
DDA EILQ
Sbjct: 621 DDAGEILQ 628
>SB_39483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 30
Score = 42.3 bits (95), Expect = 5e-04
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 108 EVGMGNTCQWKLCTFTPSTTMSIFFEVANQ 197
E+G G T WK C PSTT + FFE+ NQ
Sbjct: 1 EIGNGGTSAWKFCGLDPSTTATFFFEIVNQ 30
>SB_12902| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1585
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 664 YSYSFGXPPEPVLLDTSSIQADRIL*XTLLSNIIYHGETIAQXRGLRNKTCRSTRTS 834
+SY FG +P L+ + ADR+L S+I+ +A + ++NK +TS
Sbjct: 1489 HSYRFGTKRDPGLVTSRFAAADRLL-AAHCSSILVKRHVVANCKQIQNKKATECQTS 1544
>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 385 HEPRHHHGGRLLVEAGRYVMETHRCVAPVSSHCC 284
H P HHH + + Y++ H C V +CC
Sbjct: 784 HHPHHHHSAIITI----YIIVNHLCHFSVGCYCC 813
>SB_20004| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Frame = -1
Query: 451 SYE--HPVE-PAQHVRSILDLGAVDHEPRHHHGGRLLV-----EAGRYVMETHRCVAPVS 296
SYE HPV P +H + L A+ H + HH GRL+ +AG +++E H V
Sbjct: 88 SYEQKHPVLLPRKH--HVSQLVALHHHVKVHHQGRLITSGATRQAGFWLIEGHATVTKAI 145
Query: 295 SHC 287
C
Sbjct: 146 KDC 148
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.5 bits (63), Expect = 3.8
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Frame = -1
Query: 400 LGAVDHEPRHHHGGRLLV---EAGRYVMETHRCVAPVSSHCCD----SDASLSARV*--Y 248
LG VD+E + HG L E YV V P++ + + SD S S Y
Sbjct: 1901 LGCVDNENKECHGNNLECVGQERTNYVYTLDN-VMPLTGNYTEWSAWSDCSKSCGEGERY 1959
Query: 247 CVMNCTQPRPPWGTVEA*FATSKNMD 170
NCT P P WG ++ + D
Sbjct: 1960 RTRNCTNPPPAWGGLDCRYIGDDRQD 1985
>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -1
Query: 514 SSRQTEA-VRIVFAVF-TELLAQSYEHPVEPAQHVRS--ILDLGAVDHEPRHHHGGRLLV 347
+ R+ E V++V A F E L +H V +H R+ I L + +PR + V
Sbjct: 167 NEREVELKVKMVEAKFHEEKLTLQQQHDVAVQKHCRNCYIAPLDGAERKPRKRRCSSVFV 226
Query: 346 EAGRYVMETHR 314
E RYV T R
Sbjct: 227 EQQRYVNMTRR 237
>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3408
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 133 NGSYVLSPPVLPCPYSLRLQIKLRRYPKVVAAAYSSSRSIRLERTETRPSH 285
N V SP P P LR +LR Y +A Y S S + PSH
Sbjct: 2357 NSPIVSSPKSTPTPLDLRDTTELRDYDPTASAHYMLSSSCDVMSNVGPPSH 2407
>SB_51560| Best HMM Match : ASC (HMM E-Value=1.6)
Length = 435
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 165 TMSIFFEVANQASTVPQGGRGCVQFITQYQTRADRDASESQQWLETG 305
+ +FF + S +P G RGCV + Q + D + W G
Sbjct: 97 SQGLFFSRVKRWSKIPLGFRGCVIIVAQIRVDMFTDLQKMGSWCVIG 143
>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
Length = 942
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 251 SDSSGQRRVRVTTVARNWGDAAVSLHHIAAGFDQEAAAVVMARLVVYR 394
+ S G+RR+RV T+A L + A DQ+A A +++++ V R
Sbjct: 730 TSSKGERRIRVHTLAM---PVTTKLQDVYAHADQQAIASLLSKMAVDR 774
>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 749 SVXQSMRSACIEDVSRRTGSGGXPKLYEYKIGWIMIRDWVRSSRINMC 606
S+ RS+ + + +T G PK+ E KI ++ + SS +N C
Sbjct: 206 SLESLSRSSIMRPIGSQTMQGFSPKILENKIDILLATETHLSSHVNSC 253
>SB_46615| Best HMM Match : RMMBL (HMM E-Value=2.5e-15)
Length = 304
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 97 YLIRRSEWATRVNGSYVLSPPVLPCPYSLRLQIKLRRYP--KVVAAAYSSSRSIRL 258
+L+RR+ + + + Y LS P L C + R QI RR+ V+A A+ +R R+
Sbjct: 241 FLLRRTTYFSNLVLIYTLSTPSLAC--TTRRQIAPRRHGNYNVIARAWQQTRISRI 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,544,247
Number of Sequences: 59808
Number of extensions: 597171
Number of successful extensions: 1639
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1637
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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