Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0651
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.5  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 751 LSNIIYHGETIAQXRGLRNKTCRSTRT 831
           +SN  YH E   Q R   NK    +RT
Sbjct: 5   ISNYSYHDEKFKQLRNEDNKIDLRSRT 31


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 751 LSNIIYHGETIAQXRGLRNKTCRSTRT 831
           +SN  YH E   Q R   NK    +RT
Sbjct: 5   ISNYSYHDEKFKQLRNEDNKIDLRSRT 31


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 98  YARSLHIQRHAGTNRTRYFQFTAT 27
           Y+R  + Q H  +N  R FQ T T
Sbjct: 340 YSREQYSQSHLISNENRDFQTTPT 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,690
Number of Sequences: 438
Number of extensions: 5024
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)