Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0650
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_57158| Best HMM Match : DAN (HMM E-Value=4.8e-25)                   28   7.2  
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1)                 28   7.2  

>SB_50230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 607 PLPRHSTSSXRKTGRNTPSRAKMCSTGIAPSTP 705
           P+P H T   +KTG+  P R       + PS P
Sbjct: 68  PVPPHETPRPKKTGKRQPMRKAKADRPLGPSPP 100


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 473 EFEPFAGSPPPPKIHSSTYATLNRIYYLGNPR 568
           E++  A +P   + HSS YATL  I   GNPR
Sbjct: 259 EYKCTAENPVTKRTHSSAYATLTVIPDRGNPR 290


>SB_57158| Best HMM Match : DAN (HMM E-Value=4.8e-25)
          Length = 144

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 449 WMKTKPTKEFEPFAGSPPPPKIHSSTYATLNRIY 550
           W KTKP K+     G  P   +++  Y   N +Y
Sbjct: 48  WCKTKPVKQIIRIEGCEPAEIVNNFCYGQCNSLY 81


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 456 RQNQQKNLNRSPDRRPHRR 512
           +Q ++ N+NR  D+RPH+R
Sbjct: 830 KQPEKTNINRQEDKRPHKR 848


>SB_6412| Best HMM Match : Extensin_2 (HMM E-Value=8.1)
          Length = 329

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 434 FTLPVWMKTKPTKEFEPFAGSPPPPKIHSSTYATLNRIYYLGNP 565
           FTLP+  +TK     +  +   PP K  + +Y  L  + YL  P
Sbjct: 5   FTLPIEYQTKSYTSLKDLSYFTPPIKYPTKSYTPLKDLTYLTPP 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,829
Number of Sequences: 59808
Number of extensions: 402109
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)