Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0650
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical pr...    33   0.22 
U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    24   5.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    24   5.5  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    24   5.5  
Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical p...    28   8.4  
Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical p...    28   8.4  

>U40954-8|AAM69083.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK813.5 protein.
          Length = 471

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 722 RNRVPCGVDGAMPVEHILARLGVF 651
           RNR  CG+DG  P+ +++ARL V+
Sbjct: 178 RNRYVCGIDGGGPIGYVIARLVVY 201


>U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical
           protein C07D10.5 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 557 GNPRIVKTRL*TKRRSDRCLGIQRRQXERLVETHQ 661
           G PR V  RL  + RS++ LGI   + ER+   H+
Sbjct: 118 GFPRKVPNRLLARMRSNKILGIINEELERMFPDHE 152


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 24.2 bits (50), Expect(2) = 5.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 482 PFAGSPPPPKIHS 520
           P AGSPPPP+  S
Sbjct: 280 PAAGSPPPPRTGS 292



 Score = 22.6 bits (46), Expect(2) = 5.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 470 KEFEPFAGSPPPP 508
           K   P AGSPPPP
Sbjct: 249 KRQAPPAGSPPPP 261


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 24.2 bits (50), Expect(2) = 5.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 482 PFAGSPPPPKIHS 520
           P AGSPPPP+  S
Sbjct: 265 PAAGSPPPPRTGS 277



 Score = 22.6 bits (46), Expect(2) = 5.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 470 KEFEPFAGSPPPP 508
           K   P AGSPPPP
Sbjct: 234 KRQAPPAGSPPPP 246


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 24.2 bits (50), Expect(2) = 5.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 482 PFAGSPPPPKIHS 520
           P AGSPPPP+  S
Sbjct: 259 PAAGSPPPPRTGS 271



 Score = 22.6 bits (46), Expect(2) = 5.5
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 470 KEFEPFAGSPPPP 508
           K   P AGSPPPP
Sbjct: 228 KRQAPPAGSPPPP 240


>Z70284-13|CAB54280.1|  639|Caenorhabditis elegans Hypothetical
           protein K07F5.13c protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +1

Query: 550 LFGKPTNSQDALVNETKK*PLPRHSTSSXRKTGRNTPSRAKMCSTGIAPSTP 705
           LFG  T  + A    T   P    +TSS    G  TPS+    ST  A STP
Sbjct: 3   LFGSSTPQKQAFTFPTPNAP----TTSSGTLFGSTTPSKPLFGSTAQASSTP 50


>Z70284-12|CAB54278.1|  549|Caenorhabditis elegans Hypothetical
           protein K07F5.13b protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +1

Query: 550 LFGKPTNSQDALVNETKK*PLPRHSTSSXRKTGRNTPSRAKMCSTGIAPSTP 705
           LFG  T  + A    T   P    +TSS    G  TPS+    ST  A STP
Sbjct: 3   LFGSSTPQKQAFTFPTPNAP----TTSSGTLFGSTTPSKPLFGSTAQASSTP 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,559,405
Number of Sequences: 27780
Number of extensions: 317267
Number of successful extensions: 909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)