Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0650
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi...    31   1.1  
At3g62680.1 68416.m07041 proline-rich family protein contains pr...    28   5.9  

>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
           protein similar to RNA binding protein PufA GB:AAD39751
           [Dictyostelium discoideum] and similar to Pumilio
           protein GB:A46221 [Drosophila sp.]
          Length = 1003

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +1

Query: 544 DILFGKPTNSQDALVNETKK*PLPRHSTSSXRKTGRNTPSRAKMCSTGIAPSTPQGT 714
           D L     NS + ++  T   P+PR+ T      GR+T S      T + P   + T
Sbjct: 278 DSLHSTAKNSPNTMLGSTMSSPVPRNRTPDSHLVGRSTASGLPPIGTRVGPVEKKNT 334


>At3g62680.1 68416.m07041 proline-rich family protein contains
           proline-rich region, INTERPRO:IPR000694
          Length = 313

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 434 FTLPVWMKTK--PTKEFEPFAGSPPPPKIHSSTYATLNRIYYLGNPRIVK 577
           +T PV+  T   P  +  P   SPPPP +   TY    + Y    P I+K
Sbjct: 140 YTPPVYKPTPSPPVYKKSPSYSSPPPPYVPKPTYTPTTKPYV---PEILK 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,040
Number of Sequences: 28952
Number of extensions: 288339
Number of successful extensions: 1168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)