BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0649 (933 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 29 1.2 SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 27 2.9 SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 5.0 SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 8.7 >SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizosaccharomyces pombe|chr 3|||Manual Length = 979 Score = 28.7 bits (61), Expect = 1.2 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = +2 Query: 326 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 430 C+IN W LRL +L + NQ S E++ EKR+P Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308 >SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 607 Score = 27.5 bits (58), Expect = 2.9 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +1 Query: 451 RANYPLPAREVVTKNNDT 504 +AN P+P EVVT+NN T Sbjct: 199 KANIPVPTSEVVTENNVT 216 >SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1362 Score = 26.6 bits (56), Expect = 5.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 203 VLLLDQNQSTEGLASEVVILMNLDNFCRSHGQVPATH 313 +LLLD+ S SEV++ LDN RS + H Sbjct: 588 ILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAH 624 >SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 306 Score = 25.8 bits (54), Expect = 8.7 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -3 Query: 439 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 341 P MW P N+ + YP +PW S+ LPS Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,675,836 Number of Sequences: 5004 Number of extensions: 72742 Number of successful extensions: 149 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 149 length of database: 2,362,478 effective HSP length: 73 effective length of database: 1,997,186 effective search space used: 473333082 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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