Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0649
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    29   1.2  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   2.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   5.0  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   8.7  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 326 CLINFRW*F---LRLPWLSRVTGNQGSIPEREPEKRLP 430
           C+IN  W     LRL +L +   NQ S  E++ EKR+P
Sbjct: 271 CMINETWPVDRALRLQFLIQQRNNQSSNEEQKQEKRVP 308


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 451 RANYPLPAREVVTKNNDT 504
           +AN P+P  EVVT+NN T
Sbjct: 199 KANIPVPTSEVVTENNVT 216


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 203 VLLLDQNQSTEGLASEVVILMNLDNFCRSHGQVPATH 313
           +LLLD+  S     SEV++   LDN  RS   +   H
Sbjct: 588 ILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAH 624


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 439 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 341
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,675,836
Number of Sequences: 5004
Number of extensions: 72742
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)