Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0649
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    29   6.3  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -2

Query: 446 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI-ES**GRHLKDASPVLDHAICKSYP 270
           +P+  V+  ++ PS +S     + VTT  V+ TTI  S         + V   A   + P
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATP 618

Query: 269 DSSKLRLRTRGPPSIGFDLI 210
             SK R  TR P +   +L+
Sbjct: 619 KPSK-RTTTRRPMTASKELV 637


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 628 CCG*KARSCICAPRCRCTAFRXDT 699
           CCG     C C PRC C   R  T
Sbjct: 79  CCGCGCGCCCCRPRCCCCCRRCCT 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,636,257
Number of Sequences: 27780
Number of extensions: 423770
Number of successful extensions: 1037
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)