Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0649
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   4.0  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   9.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/45 (17%), Positives = 24/45 (53%)
 Frame = +3

Query: 6   SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
           + R +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 217 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/45 (17%), Positives = 24/45 (53%)
 Frame = +3

Query: 6   SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
           + R +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 217 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFL 261


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 753 KPAXFRTPAHRRYVRKRVSITAECGAPTARRTNATT 646
           KPA        RY+ +  ++  E GA T   T+ T+
Sbjct: 41  KPAMVEEKTQLRYLEELNALRTELGASTKLATDTTS 76


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 55  MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 189
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/45 (17%), Positives = 24/45 (53%)
 Frame = +3

Query: 6   SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
           + R +  Y C  +  + ++    +RR   +  +++++P + +S+L
Sbjct: 213 AVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCMGISFL 257


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 27  YACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
           Y C  +    +     LRR   +  ++++VP + +SYL
Sbjct: 215 YPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYL 252


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/45 (20%), Positives = 23/45 (51%)
 Frame = +3

Query: 6   SARGQ*LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLSYL 140
           + R +  Y C ++    +     LRR   +  +++++P + +S+L
Sbjct: 209 AVRNEAFYICCEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFL 253


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 441  RQQARKLPTPGTGGSDE 491
            R+Q RK  TPG   SDE
Sbjct: 1768 RRQQRKQQTPGDVESDE 1784


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 441  RQQARKLPTPGTGGSDE 491
            R+Q RK  TPG   SDE
Sbjct: 1764 RRQQRKQQTPGDVESDE 1780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,230
Number of Sequences: 438
Number of extensions: 5806
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)