Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0648
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   106   3e-24
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    29   0.93 
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.1  
SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   3.8  
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    25   8.7  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   8.7  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  106 bits (255), Expect = 3e-24
 Identities = 51/73 (69%), Positives = 61/73 (83%)
 Frame = +2

Query: 23  ALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGGRVK 202
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA+ +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 203 TLHPAVHAGILAR 241
           TLHPAVH GILAR
Sbjct: 63  TLHPAVHGGILAR 75



 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 31/50 (62%), Positives = 41/50 (82%)
 Frame = +1

Query: 256 QEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 405
           ++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDIGGVTLLRA
Sbjct: 81  EKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDIGGVTLLRA 130



 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
 Frame = +3

Query: 411 KNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGQGRD*P*RRSLILRTMTSPYRTTSA-- 584
           KNH RVT++ DPADY     +   +K  Q           R +  L+   S     +A  
Sbjct: 133 KNHARVTILSDPADYATFTDKFLSDKLTQDD---------RNTYALKAFASTASYDAAIT 183

Query: 585 ----SNTSXGQAQLTLRYGMNPHQKPAQVFTTRDSFADSRH*NGAPGFINLCDALNA 743
                  + G  QLTLRYG NPHQ PAQ F  +      +   G+PG+INL DALN+
Sbjct: 184 DYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLP-FKVLCGSPGYINLMDALNS 239



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 23/56 (41%), Positives = 27/56 (48%)
 Frame = +2

Query: 512 RQRLALKAFTHTSDYDLAISDYFRKQYFARASPTDLKIRYEPTSEAGPGIHDQRQL 679
           R   ALKAF  T+ YD AI+DYFRKQY A      L+    P         +Q  L
Sbjct: 164 RNTYALKAFASTASYDAAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPL 219


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 139 PHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIRLC 255
           PHS    GH +ST  +  S  N  S GT +D S++   C
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD-SNVAHGC 284


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 392 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 297
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


>SPBC15D4.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 637 HIRSRPRYSRPETALPIHDTETVRL 711
           H + RPR +  E  +P  D  TVRL
Sbjct: 50  HSQKRPRLTNDEETIPEEDDSTVRL 74


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 485 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMF 369
           +L +F DY   +G   D    VV++      +TP M  F
Sbjct: 121 ILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFF 159


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 449 GRVTDDGDPVVVLGXARRRVTPPMSMFSTASATVTSGLDTVWTNGYRL 306
           G+ T  G   V +    RRV P +S+  ++  TV   +DT ++   +L
Sbjct: 461 GQSTKPGADPVSVEEELRRVIPMISLLRSSGITVPISIDTYYSKVAKL 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,202
Number of Sequences: 5004
Number of extensions: 55417
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)