Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0648
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 86 3e-17
10_08_0415 - 17761594-17762382 31 0.97
09_04_0652 - 19227686-19227926,19229368-19232294 29 3.0
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376... 29 3.0
11_04_0247 + 15313008-15313137,15313226-15313959,15314038-153141... 29 5.2
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 5.2
08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597... 28 6.9
02_01_0389 - 2816878-2817390,2817552-2817670,2817803-2817865,281... 28 6.9
08_01_0621 - 5426210-5427787 28 9.1
03_01_0112 + 902459-902770,903275-903280 28 9.1
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 28 9.1
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 85.8 bits (203), Expect = 3e-17
Identities = 43/75 (57%), Positives = 50/75 (66%)
Frame = +2
Query: 17 KLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGGR 196
K AL+S+SDKT L L L G +I++GGTA L AG+ V V IT PEML GR
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 197 VKTLHPAVHAGILAR 241
VKTLHP+VH GILAR
Sbjct: 106 VKTLHPSVHGGILAR 120
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 295 VVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 405
VVV NLYPF V+ ++ D +ENIDIGG T++RA
Sbjct: 140 VVVVNLYPFYNKVTSGVISFEDGIENIDIGGPTMIRA 176
Score = 34.3 bits (75), Expect = 0.10
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 485 QTSSDDFGTRQRLALKAFTHTSDYDLAISDYFRKQ 589
Q DD R+ LA KAF H + YD A+S++ KQ
Sbjct: 201 QGKQDDQQFRKMLAWKAFQHVASYDSAVSEWLWKQ 235
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 615 TLRYGMNPHQKPA 653
TLRYG NPHQK A
Sbjct: 265 TLRYGENPHQKAA 277
>10_08_0415 - 17761594-17762382
Length = 262
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 106 WRYRQXASERRPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIR 249
WRY+ A R +S C G + + GE + +G C D++ I+R
Sbjct: 121 WRYKGVA---RQSASMCCGQLDHSSGMHDDGEVWLRAGPCSDIAGIVR 165
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 118 QXASERRPHSSRCVGHHESTGDARRSGENFTSSGTCW 228
Q SE+ P S C S + ++G + GTCW
Sbjct: 444 QVVSEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW 480
>02_01_0521 +
3768072-3768239,3768280-3768337,3769197-3769659,
3769736-3769990,3770763-3770934,3772260-3772910,
3773659-3774045,3774123-3774155,3774239-3774307,
3774388-3774463,3775135-3775223,3775442-3775615,
3775693-3775821
Length = 907
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 375 DVLDRVRHGHVRLRYRLDE-RVQVTDHHAYHLV 280
DVL +R GHV L Y L E DHH LV
Sbjct: 687 DVLKLIRDGHVELHYTLKEFSTPHADHHMDDLV 719
>11_04_0247 +
15313008-15313137,15313226-15313959,15314038-15314169,
15314179-15314499,15314581-15314888,15315007-15315411,
15315494-15315664,15315744-15316002,15316443-15316481,
15317619-15317750
Length = 876
Score = 28.7 bits (61), Expect = 5.2
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 493 IRRLWDKAEISPEGVHSY 546
+++LW AE++P+G+HS+
Sbjct: 833 LQQLWATAEVNPQGIHSH 850
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -1
Query: 396 EGHAADVDVLDRVRHGHVRLRYRLDERVQVTDHHAYH 286
+GH D DR HGH R R+ D+R D YH
Sbjct: 1296 DGHDRDHHRHDRRHHGHDR-RHHFDDRGYHYDDRGYH 1331
>08_02_0424 - 16957793-16958089,16958215-16958601,16958737-16959735,
16959840-16959994,16960082-16960169,16960241-16960344,
16960424-16960646,16960839-16960923,16961006-16961397,
16962841-16963005
Length = 964
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 551 DYDLAISDYFRKQYFARASPTDLKIRYEPTSEAGPGIHD 667
DY + + + K+ + P ++ PTSE PG+ D
Sbjct: 909 DYHVTLRPHMSKEIMDWSKPAAELVKLNPTSEYAPGLED 947
>02_01_0389 -
2816878-2817390,2817552-2817670,2817803-2817865,
2818229-2818355,2818607-2818827,2818973-2819136,
2819766-2819846,2820657-2820728,2820857-2820995,
2821206-2821690,2821995-2822550,2822610-2822666,
2822705-2822774
Length = 888
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 142 HSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIIRLCQEDMKRQKYEMISVV 300
H S G ES DAR G + W ++ + C+ ++ R++ M VV
Sbjct: 781 HQSLDHGSIESIVDARMGGGGGYDINSVWKVADLALHCKREVSRERPTMTEVV 833
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 464 YSIVVGRVTDDGDPVVVLGXARRRVTPP 381
YS+ GR+ DDGD + + RR V+ P
Sbjct: 140 YSLAEGRMCDDGDVRLPMACRRRYVSSP 167
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 193 TSEHLRCSRDVRHILNCEAGVPK 125
T+ LR RD RH+ CE+GVPK
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPK 79
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 588 NTSXGQAQLTLRYGMNPHQKPAQV-FTTRDSFADSRH*NGAPGFIN 722
N GQ ++ ++ P QKPA++ + T + +RH N APG N
Sbjct: 782 NNKVGQLKMDVKIDPRPLQKPAKIGYGTDGNVPTARH-NVAPGGSN 826
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,985,297
Number of Sequences: 37544
Number of extensions: 409331
Number of successful extensions: 1290
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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