Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0648
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 3e-26
SB_57127| Best HMM Match : MGS (HMM E-Value=0.25) 72 6e-13
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 31 0.75
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 30 2.3
SB_26612| Best HMM Match : NC (HMM E-Value=6.7) 29 4.0
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 9.2
>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 116 bits (278), Expect = 3e-26
Identities = 55/79 (69%), Positives = 66/79 (83%)
Frame = +2
Query: 14 GKLALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEMLGG 193
G LALLSVS+K GL+ AK L + G +L+ASGGTA +RNAG+ V+DVS+IT APEMLGG
Sbjct: 33 GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEITGAPEMLGG 92
Query: 194 RVKTLHPAVHAGILARLSD 250
RVKTLHPAVH GILAR+S+
Sbjct: 93 RVKTLHPAVHGGILARVSE 111
Score = 85.4 bits (202), Expect = 4e-17
Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Frame = +3
Query: 411 KNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGQGRD*P*RRSLILRTM--TSPYRTTSA 584
KNH+RVTVVCDP DY+ V+ E+ EN+ T R++L L+ T+ Y +
Sbjct: 166 KNHERVTVVCDPEDYNKVLSEMTENETCDTLPDT------RKTLALKAFSHTASYDMAIS 219
Query: 585 ----SNTSXGQAQLTLRYGMNPHQKPAQVFTTRDSFADSRH*NGAPGFINLCDALNA 743
S + + LRYGMNPHQKPAQ+ T + NGAPGFINLCDA N+
Sbjct: 220 DYFRKEYSENVSHIPLRYGMNPHQKPAQLMTMEPEL-PVKVLNGAPGFINLCDAFNS 275
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +1
Query: 262 DMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 405
DM +Q +E I VVVCNLYPFV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 116 DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 163
Score = 53.6 bits (123), Expect = 2e-07
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +2
Query: 509 TRQRLALKAFTHTSDYDLAISDYFRKQYFARASPTDLKIRYEP 637
TR+ LALKAF+HT+ YD+AISDYFRK+Y S L+ P
Sbjct: 199 TRKTLALKAFSHTASYDMAISDYFRKEYSENVSHIPLRYGMNP 241
>SB_57127| Best HMM Match : MGS (HMM E-Value=0.25)
Length = 79
Score = 71.7 bits (168), Expect = 6e-13
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +1
Query: 262 DMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 405
DM +Q +E I VVVCNLYPFV TV+K V V++AVE IDIGGVTLLRA
Sbjct: 13 DMAKQGFEYIRVVVCNLYPFVNTVAKEGVIVSEAVEQIDIGGVTLLRA 60
Score = 35.5 bits (78), Expect = 0.046
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 411 KNHDRVTVVCDPADYD 458
KNH+RVTVVCDP DY+
Sbjct: 63 KNHERVTVVCDPEDYN 78
>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4002
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 461 CSQRNQREQTSSDDFGTRQRLALKAFTHTSDYDLAISDYFRK 586
C++RN R Q D G R + L + DYD ++ YF K
Sbjct: 3714 CARRNNRNQWIQVDLGRRHIVTLISTQGRQDYDQWVTSYFVK 3755
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +3
Query: 420 DRVTVVCDPADYDAVVKEIKE-NKHHQTTL 506
D + CDPA+ +A++ I+E N+HHQ L
Sbjct: 1447 DGILRTCDPAELEALLMLIEEQNEHHQKVL 1476
>SB_26612| Best HMM Match : NC (HMM E-Value=6.7)
Length = 451
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -2
Query: 494 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 324
+ V+ + S+ R+T D V R+TP M TAS T +T +DTV+
Sbjct: 133 LTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVY 192
Query: 323 TNGYRLQTTTLII 285
T TL++
Sbjct: 193 TASVTFYRLTLVM 205
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 485 VLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVWTNG 315
V+ + S+ RVT D V R+TP M TAS T +T +DTV+T
Sbjct: 68 VMDTVYTASVTFYRVTLVMDTVYTASVTFYRLTPVMDTVYTASVTFYRLTPVMDTVYTAS 127
Query: 314 YRLQTTTLII 285
TL++
Sbjct: 128 VTFYRLTLVM 137
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -2
Query: 494 MMFVLFDFFDYSIVVGRVTDDGDPVVVLGXARRRVTPPMSMFSTASAT---VTSGLDTVW 324
+ V+ + S+ R+T D V R+TP M TAS T VT +DTV+
Sbjct: 269 LTLVMDTVYTASVTFYRLTLVMDTVYTASVTFYRLTPVMDTVYTASVTFFRVTLVMDTVY 328
Query: 323 TNGYRLQTTTLIIS 282
T TL+++
Sbjct: 329 TASVTFFRVTLVMN 342
>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 164 CPTHLEL*GRRSEAXWRYRHWQSTAGHIPTGSLLTRVDPSCLK 36
CP + + R+ + Y W+ TG+L+TR++PS +K
Sbjct: 447 CPNDITITTARNNSKAAYVTWKPPQAVDNTGNLVTRIEPSEIK 489
>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 370 NIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRRL 504
N D+ + P PSS TR T +KK R+N+++++
Sbjct: 377 NWDLNPTDHTQFVPSKAAAKPSSPTRTTQQYHTKKGHRSNVVQKV 421
>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 28.3 bits (60), Expect = 7.0
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 491 SSDDFGTRQRLALKAFTHTSDYDLAISDYFRKQYFARASPTDL-KIRYEPTSEAGP 655
SSDD T+Q + L A D D A+ K+ + PTDL ++ + TSE P
Sbjct: 384 SSDDGETKQVMVLAATNFPWDLDEALRRRLEKRIYI-PLPTDLPQVTHNLTSEVHP 438
>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 479 FDFFDYSIVVGRVTDDGDPVVVL 411
FDF D+SI+V ++T PVV++
Sbjct: 294 FDFIDHSILVDKLTYQARPVVIV 316
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 325 QTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTT 456
+T P+ T +I GV+ A P TT+G P + T P T
Sbjct: 2571 ETTFVPETTAVPETTGSEITGVSETTAVPETTSG-PMTTTGPET 2613
>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 645
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 10 KWKTSSSQRFRQDGSTLVSKEP 75
+W T ++R+R+DGS ++ EP
Sbjct: 334 QWHTVVAERYRRDGSLILDSEP 355
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,641,913
Number of Sequences: 59808
Number of extensions: 477842
Number of successful extensions: 1347
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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