Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0648
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   113   9e-26
U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical pr...    45   7e-05
Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   3.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   3.5  
U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score =  113 bits (273), Expect = 9e-26
 Identities = 56/86 (65%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   SNGK-LALLSVSDKTGLLSLAKSLSECGLQLIASGGTARXLRNAGLTVQDVSDITRAPEM 184
           ++GK LA++SVSDKTGL+ LA  L   GL LIASGGTA+ +R+ G+ V DV+D+T+ PEM
Sbjct: 2   TDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEM 61

Query: 185 LGGRVKTLHPAVHAGILARLSDSARK 262
           LGGRVKTLHPAVH GILAR ++S RK
Sbjct: 62  LGGRVKTLHPAVHGGILARDTESDRK 87



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 30/50 (60%), Positives = 39/50 (78%)
 Frame = +1

Query: 256 QEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRA 405
           ++D+++     +SVVVCNLYPF +TV   D +V +AVENIDIGGVTLLRA
Sbjct: 86  RKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVEEAVENIDIGGVTLLRA 135



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
 Frame = +3

Query: 411 KNHDRVTVVCDPADYDAVVKEIKENKHHQTTLGQGRD*P*RRSLILRTM--TSPYRTTSA 584
           KNH+RV+V+CDPADYD ++ E+K         G  R+   R+ L L+    T+ Y  + +
Sbjct: 138 KNHERVSVICDPADYDHIISELKSG-------GTTRER--RQLLALKAFEHTTSYDESIS 188

Query: 585 SN-----TSXGQAQLTLRYGMNPHQK-PAQVFTTRDSFADSRH*NGAPGFINLCDALN 740
                     G+  L LRYG NPHQK  A+++   D     +  NG+PG+IN+ D LN
Sbjct: 189 GFMRRRFAGNGERALPLRYGTNPHQKDDAELYIVEDEM-PIKVLNGSPGYINILDGLN 245



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +2

Query: 512 RQRLALKAFTHTSDYDLAISDYFRKQYFARASPTDLKIRY 631
           RQ LALKAF HT+ YD +IS + R++ FA      L +RY
Sbjct: 169 RQLLALKAFEHTTSYDESISGFMRRR-FAGNGERALPLRY 207


>U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical
           protein C55F2.1c protein.
          Length = 393

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +3

Query: 600 GQAQLTLRYGMNPHQK-PAQVFTTRDSFADSRH*NGAPGFINLCDALN 740
           G+  L LRYG NPHQK  A+++   D     +  NG+PG+IN+ D LN
Sbjct: 69  GERALPLRYGTNPHQKDDAELYIVEDEM-PIKVLNGSPGYINILDGLN 115



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 530 KAFTHTSDYDLAISDYFRKQYFARASPTDLKIRY 631
           KAF HT+ YD +IS + R++ FA      L +RY
Sbjct: 45  KAFEHTTSYDESISGFMRRR-FAGNGERALPLRY 77


>Z49070-4|CAE45098.2|  528|Caenorhabditis elegans Hypothetical
           protein T09F3.5 protein.
          Length = 528

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -2

Query: 410 GXARRRVTPPMSMFSTASATVTSGLDTVWTNGYRLQTTTLIISYF*RFMSSWQSRIIELR 231
           G + R    P+++F    A +   L    T    L+  T+I S    FM+ WQ R I   
Sbjct: 265 GKSFRYAPFPVTLFRAELAAIEEALKQ--TVDAELKNVTIITSSA-HFMTGWQRRWIRTT 321

Query: 230 SQHVPLDVKF 201
            +H P   KF
Sbjct: 322 EEHRPYTGKF 331


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +1

Query: 322   VQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRR 501
             +Q   +P      AVE+ ++  V L  A P    GSP  V   T  + ++K K       
Sbjct: 15783 IQVTDRPAAPGKPAVEDQNVDSVRLRWAAPTNDGGSP--VRNYTVEMCTEKGK------- 15833

Query: 502   LWDKAEISPEGVHSYFGL*P 561
              W KAE++ +   + F L P
Sbjct: 15834 TWTKAEVTKQAFITLFNLVP 15853


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/80 (28%), Positives = 35/80 (43%)
 Frame = +1

Query: 322   VQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTRPTTML*SKKSKRTNIIRR 501
             +Q   +P      AVE+ ++  V L  A P    GSP  V   T  + ++K K       
Sbjct: 15783 IQVTDRPAAPGKPAVEDQNVDSVRLRWAAPTNDGGSP--VRNYTVEMCTEKGK------- 15833

Query: 502   LWDKAEISPEGVHSYFGL*P 561
              W KAE++ +   + F L P
Sbjct: 15834 TWTKAEVTKQAFITLFNLVP 15853


>U47144-3|AAB52619.1|  292|Caenorhabditis elegans Hypothetical
           protein ZC53.6 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -1

Query: 189 PSISGALVMSDTS*TVRPAFRSXLAVPPLAINCRPHSDRLFANESRPVLSETLRRASFPF 10
           PS S A   S     +RP  ++  A  P A     H+D+LF         E LRR +FPF
Sbjct: 6   PSSSEAPTPSGQCSRLRPRSKNSTAPEPPAPKLTDHTDKLFI--------EQLRRTTFPF 57

Query: 9   D 7
           +
Sbjct: 58  E 58


>U70852-5|AAK29817.2|  322|Caenorhabditis elegans Hypothetical
           protein F45E4.6 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 283 EMISVVVCNLYPFVQTVSKPDVTVADAVENIDIGGVTLLRAXPRTTTGSPSSVTR 447
           + I   + +LYPFV  +     T ADAV++ +      + +  RTTT +  + T+
Sbjct: 244 DRIDFTLYDLYPFVGKLGGCIYTEADAVDDKNSIHTLFIYSTTRTTTTTAKTTTK 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,042
Number of Sequences: 27780
Number of extensions: 328770
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)