Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0647
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.5  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   3.4  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.4  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   4.4  

>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 242 LRQIGRTAGNSCLATRKIHFCK*K-HDFKLIIGNKW-MSHTSGELT 111
           LR++G+T   + +  RK+H    K   FK++ G  W   + S ELT
Sbjct: 45  LRELGKTPEEALINLRKLHAEGSKERSFKMVQGRIWKKGYESNELT 90


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 610 MNNDLGSWSLPDVLIVLVVLMLGHTRIPRFITTXK 714
           ++ D+GS++LP  L  L+   L  T+   F+T+ K
Sbjct: 205 ISKDMGSYNLPRFLASLIDASLNDTKEIEFVTSNK 239


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 365  DPIRRTGSYRRGHDPKRPTFIIQFRILTILH*TIKSGLRSFLRQIGR 225
            D +RR   Y  G++P  PT ++ + +L       K     F+  + R
Sbjct: 920  DDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVAR 966


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = -1

Query: 455 VGVLTPTTSLYRAAHFPLSFHFRVSDGLSRDPIRRTGSYRRGHDPKRPTFIIQFRILTIL 276
           VG++    +++++   PL   F+  DG S+ PI     ++ G D ++   +IQ  ILT++
Sbjct: 512 VGIIPDACTVFKSTMQPLRLLFKCQDG-SKYPI----IFKNGDDLRQDQLVIQ--ILTLM 564

Query: 275 H*TIK 261
              +K
Sbjct: 565 DKLLK 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,420,496
Number of Sequences: 5004
Number of extensions: 70960
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)