Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0647
         (848 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3 pr...    31   5.3  
AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine recepto...    31   5.3  

>AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3
            protein.
          Length = 4870

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 139  HLLPIISLKSCFYLQKWILRVARQLLPAVRPICLKNDLRPLLIVQCRIVKIRN 297
            H++ +I    C YL  W  R    L P+  P C K     L ++   I+KI N
Sbjct: 3129 HVIEVILPMLCNYLSYWWERGPENLPPSTGPCCTKVTSEHLSLILGNILKIIN 3181


>AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine receptor
            protein.
          Length = 4866

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 139  HLLPIISLKSCFYLQKWILRVARQLLPAVRPICLKNDLRPLLIVQCRIVKIRN 297
            H++ +I    C YL  W  R    L P+  P C K     L ++   I+KI N
Sbjct: 3130 HVIEVILPMLCNYLSYWWERGPENLPPSTGPCCTKVTSEHLSLILGNILKIIN 3182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,739,067
Number of Sequences: 237096
Number of extensions: 2293818
Number of successful extensions: 5389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5389
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)