Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0647
         (848 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U28943-9|AAA68361.2|  325|Caenorhabditis elegans Serpentine rece...    28   9.6  
U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine rece...    28   9.6  
AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U67953-3|AAL13328.1|  321|Caenorhabditis elegans Hypothetical
           protein ZC13.2 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 453 WCAHPDYL-SLPSCSFSLIFPFPCFRRIVARSYTTNWQLPARTRPETTDL 307
           W  + DY+     CS   +F   C ++    + T+N   P  TRP   D+
Sbjct: 264 WVKYIDYMHGKKKCSICSLFSLCCGKKEPLEAATSNGTAPTNTRPYEDDV 313


>U28943-9|AAA68361.2|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 59 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 438 DYLSLPSCSF-SLIFPFPCFRRIVA-RSYTTNWQLPARTRPETTDLHYSISNFN 283
           ++L L S +F +L+ PF  F  IV  R     W LP R +  TT    S S FN
Sbjct: 272 EHLILVSSAFPALLDPFISFYFIVPYRQAIIEWVLPKRQQRITTVTSNSTSGFN 325


>U28943-8|AAK68293.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 58 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 438 DYLSLPSCSF-SLIFPFPCFRRIVA-RSYTTNWQLPARTRPETTDLHYSISNFN 283
           ++L L S +F +L+ PF  F  IV  R     W LP R +  TT    S S FN
Sbjct: 272 EHLILVSSAFPALLDPFISFYFIVPYRQAIIEWVLPKRQQRITTVTSNSTSGFN 325


>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 423 PSCSFSLIFPFPCFRRIVARSYTTNWQLPARTRPETTD 310
           P  S + +FP P  R     S ++ W +  + RP T+D
Sbjct: 504 PGTSTTPMFPIPIARYEQVNSSSSMWPMDGQRRPSTSD 541


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,559,209
Number of Sequences: 27780
Number of extensions: 390692
Number of successful extensions: 691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)