Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0647
         (848 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13530.1 68414.m01586 expressed protein  ; expression support...    31   1.3  
At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family prote...    28   9.0  

>At1g13530.1 68414.m01586 expressed protein  ; expression supported
           by MPSS
          Length = 385

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -1

Query: 356 RRTGSYRRGHDPKRPTFIIQFRILTILH*TIKSGLRSFLRQIGRTAGNSCLATRK 192
           R T  Y+ GH   R   +     + +LH    S L   +R+ G+ AG +C++ ++
Sbjct: 61  RVTVKYQIGHGDDRIVLLDSVAFIPVLHQPPSSNLYYVIRRRGKHAGEACVSAKE 115


>At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family protein
           Contains PF 00561 alpha/beta hydrolase fold
          Length = 648

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 628 SWSLPDVLIVLVVLMLGHTRIP-RFITTXKPYCVWHSILPSNVARVSSIY 774
           SW +P + +  VV  LGHT +  R     +   ++H + P  V    SI+
Sbjct: 150 SWGMPVLFLSSVVFALGHTVVAYRTSCRARRKILYHRVDPEAVLSCKSIF 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,217,133
Number of Sequences: 28952
Number of extensions: 351842
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)