Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0645
(850 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 71 2e-13
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 58 1e-09
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 58 2e-09
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 28 1.9
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 27 4.4
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 26 5.9
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 26 5.9
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 7.8
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 71.3 bits (167), Expect = 2e-13
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Frame = +1
Query: 262 DSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGP--IWVRNKKFERRKYNW 435
D + FFW+F + + +N PV++WL GGPG +SL GLF E GP I + K E ++W
Sbjct: 598 DRHLFFWFFESR-NDPENDPVVLWLNGGPGCSSLTGLFMELGPSSINIETLKPEYNPHSW 656
Query: 436 ALSHHIIYIDNPVGTGFS 489
+ +I++D P+ TGFS
Sbjct: 657 NSNASVIFLDQPINTGFS 674
Score = 39.5 bits (88), Expect = 6e-04
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 516 VDETQVGEQLYSTLIQFFQLFPELQTNNFFVTGESYGGKYVP 641
+D G+ +Y+ L FF FP+ +F + GESY G Y+P
Sbjct: 681 LDTVTAGKDVYAFLNLFFAKFPQYAHLDFHIAGESYAGHYIP 722
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 58.4 bits (135), Expect = 1e-09
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 262 DSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGPIWV-RNKKFERRKYNWA 438
D + FFW F ++ P ++ ++ WL GGPG +S G E GP + N F+ W
Sbjct: 57 DGDLFFWMFESVKPEYEHRSIL-WLNGGPGCSSEDGSLMEVGPFRLDDNNTFQLNPGRWD 115
Query: 439 LSHHIIYIDNPVGTGFSFT 495
+++++D P+GTG+S++
Sbjct: 116 ELGNLLFVDQPLGTGYSYS 134
Score = 33.9 bits (74), Expect = 0.029
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 561 QFFQLFPELQTNNFFVTGESYGGKYVP 641
+F + FPE + +F+ GES+ G+Y+P
Sbjct: 156 KFLEEFPERANDEWFIAGESFAGQYIP 182
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 58.0 bits (134), Expect = 2e-09
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +1
Query: 262 DSNQFFWYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGPIWV--RNKKFERRKYNW 435
D + F+ Y PA+V + IVWLQGGPG G F+ENGPI + + +W
Sbjct: 84 DKSLFYTYAPAVVDSET---FIVWLQGGPGCAGTLGFFSENGPIEISQSSPSPSLNPESW 140
Query: 436 ALSHHIIYIDNPVGTGFS 489
+++++D P GTG+S
Sbjct: 141 TNFANMLWLDQPFGTGYS 158
Score = 30.3 bits (65), Expect = 0.36
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 507 SYCVDETQVGEQLYSTLIQFFQLFPELQTNNFFVTGESYG 626
+Y + + L F+Q FP L ++ GESYG
Sbjct: 163 AYTTTIEEASSDFVNALKSFYQKFPHLMKKKLYLVGESYG 202
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -2
Query: 648 PELVHTFLHMILQSQKNYWFEVLETTGRTGSEWSITVRQLESHQHSSFRIFSETESSANR 469
PEL++ FL I Y V E T + + I + E +HS R F T S ++
Sbjct: 269 PELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINT-EDPRHSQIRSFLATMMSQDK 327
Query: 468 VVNVYNMMTE 439
+ ++ + +TE
Sbjct: 328 IRSIDDKLTE 337
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 433 WALSHHIIYIDN---PVGTGFSFTKNPKATVLMRLKLANSYTPL 555
W++ +H+IYI N P+ + N K L+++ L+N +T L
Sbjct: 31 WSVCYHLIYILNRYQPISPNPRGSLNSKWYHLLQIPLSNRHTDL 74
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 623 WRKVCTSSGPTQFTRKILQHRLKLI 697
WRK+ +GP F + + H+ LI
Sbjct: 548 WRKLLLDNGPAAFAKAVRNHKRGLI 572
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 26.2 bits (55), Expect = 5.9
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Frame = +1
Query: 280 WYFPAMVPNSKNAPVIVWLQGGPGATSLYGLFTENGPIWVRN----KKFERRKYNWALSH 447
W P + K + VW G S+ +T+ W RN K ++ + H
Sbjct: 459 WGTPVPLEEFKGKVLYVWFDATIGYISITANYTDEWEKWWRNPEQVKLYQFMGKDNVPFH 518
Query: 448 HIIYIDNPVGTGFSFT 495
+I+ + +GTG +T
Sbjct: 519 TVIFPSSLLGTGEKWT 534
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 289 PAMVPNSKNAPVIVWLQGGPGATSLYG 369
PA + K+ +I+WL PG + +G
Sbjct: 917 PAQITGCKDNKLIIWLSTAPGLDAQWG 943
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,747
Number of Sequences: 5004
Number of extensions: 74559
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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