Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0644
         (902 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   7.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   7.6  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   7.6  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 504 FAYYKASKFALFGFSTTLGHKQNYDRTGVRIVTVCPG 614
           FAY    K A+    T+  H++     G  I+   PG
Sbjct: 258 FAYNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPG 294


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 569 ELRQNWGKNRDCMPRVYKLSHD 634
           +LR NW    D    +YK  HD
Sbjct: 215 DLRGNWAGFADSHSPLYKRPHD 236


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 383 LISRVFLNELSHMIPALF 330
           L+S   L +L+ ++PALF
Sbjct: 225 LVSLALLMQLTQLVPALF 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,996
Number of Sequences: 336
Number of extensions: 3929
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)