Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0644
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    33   0.003
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     28   0.10 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.54 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   5.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   5.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 33.5 bits (73), Expect = 0.003
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +2

Query: 65  MERELKNKIVAITGGAEGIGLSIADQFLSEGAVVVILDINLEKGQNAVKELQSKHG 232
           ME+   +++  +TG   GIG  + +  + +G  V+ +   ++K +  V+EL+SK G
Sbjct: 1   MEQNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPG 56



 Score = 25.0 bits (52), Expect = 0.94
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 513 YKASKFALFGFSTTLGHKQNYDRTGVRIVTVCPGFTSSAMTAQ 641
           Y ASK AL   +  L  +     + ++++++ P    + MTAQ
Sbjct: 161 YLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQ 203


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 512 IRKYGSRQ*PYIDDTLQIVP 453
           IR Y  +Q PY+ DTLQI P
Sbjct: 455 IRTYTQQQFPYVHDTLQIQP 474


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -3

Query: 444 TFVCPHVLSKLHRPLDGSHSVDFKSLPQ*TLAYDPGVVHQDVNTFVSIYELIEYRFQIGR 265
           T  C     K HR +  + S  F+ L + T    P +V QDV  F  ++ L+E+ +    
Sbjct: 35  TLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDV-AFSDLHALVEFIYHGEV 93

Query: 264 NIAFKKLT 241
           N+  + L+
Sbjct: 94  NVHQRSLS 101


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 300 YELIEYRFQIGRNIAFKKLTFVAPCLLCNSLT 205
           Y +I Y F I R+      T+V P +    LT
Sbjct: 239 YPMIVYEFSISRHYGILHATYVIPAVTMMLLT 270


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 670 SSTCSSHTVSC 638
           S+TCS HTV C
Sbjct: 289 STTCSGHTVRC 299


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 642 VVLSWLSL*TRGIQSRFLPQF 580
           VV+ W     RG++   LPQF
Sbjct: 189 VVMYWKETPVRGVEEAELPQF 209


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 50  SATLNMERELKNKIVAITGG 109
           S ++NM++E KN +  + GG
Sbjct: 2   SRSINMDQEKKNNVENLKGG 21


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +2

Query: 182 NLEK-GQNAVKELQSKHGATK 241
           NL K G+N +K L+  HG TK
Sbjct: 236 NLTKYGKNQIKLLEIIHGLTK 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,592
Number of Sequences: 438
Number of extensions: 4869
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)