Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0643
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 228 7e-61
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 129 4e-31
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 128 1e-30
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 102 7e-23
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 2e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 60 4e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 8e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 41 2e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.090
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.21
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.48
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.64
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.5
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 28 1.9
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.4
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 3.4
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.9
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 5.9
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz... 26 7.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.8
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 228 bits (558), Expect = 7e-61
Identities = 118/197 (59%), Positives = 129/197 (65%)
Frame = +3
Query: 252 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 431
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 432 GVSHTVPIYEGYALPHAILRLXLXXXXXXXXXXXXXXXXXXXXLPIPSGKSFRDIKEKLC 611
GV+HTVPIYEGYALPHAI+RL L + RDIKEKLC
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLC 217
Query: 612 YVALDFEQEMGNAAFQQFPSRSLRIPDGXVIHYRKRKXPLPXXXXXNLVLCMEAFGIHET 791
YVALDFEQE+ AA +S +PDG VI + P L +E GIHE
Sbjct: 218 YVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEA 277
Query: 792 TXNSIMXCEVXFVKDLY 842
T NSIM C+V KDLY
Sbjct: 278 TYNSIMKCDVDIRKDLY 294
Score = 185 bits (450), Expect = 8e-48
Identities = 81/84 (96%), Positives = 82/84 (97%)
Frame = +1
Query: 4 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 183
GMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHG
Sbjct: 15 GMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 74
Query: 184 IVTNWDDMEKIWHHTFYNELRVAP 255
IV NWDDMEKIWHHTFYNELRVAP
Sbjct: 75 IVNNWDDMEKIWHHTFYNELRVAP 98
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 129 bits (312), Expect = 4e-31
Identities = 69/198 (34%), Positives = 104/198 (52%)
Frame = +3
Query: 252 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 431
PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GD
Sbjct: 103 PEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGD 162
Query: 432 GVSHTVPIYEGYALPHAILRLXLXXXXXXXXXXXXXXXXXXXXLPIPSGKSFRDIKEKLC 611
G++H+VPIY+G+++P AI + + + + R+IKEK C
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCC 222
Query: 612 YVALDFEQEMGNAAFQQFPSRSLRIPDGXVIHYRKRKXPLPXXXXXNLVLCMEAFGIHET 791
YVA DF E+ + + + ++PD I P ++ EA G+H
Sbjct: 223 YVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQ 282
Query: 792 TXNSIMXCEVXFVKDLYA 845
SI+ ++ LY+
Sbjct: 283 LFKSILLSDIDLRSTLYS 300
Score = 97.9 bits (233), Expect = 2e-21
Identities = 41/79 (51%), Positives = 57/79 (72%)
Frame = +1
Query: 4 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 183
G KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L ++ PIE G
Sbjct: 19 GFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERG 78
Query: 184 IVTNWDDMEKIWHHTFYNE 240
I+ NW DME+IW + + ++
Sbjct: 79 IIQNWSDMEEIWSYIYSDQ 97
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 128 bits (308), Expect = 1e-30
Identities = 72/197 (36%), Positives = 101/197 (51%)
Frame = +3
Query: 252 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 431
P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGD
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 432 GVSHTVPIYEGYALPHAILRLXLXXXXXXXXXXXXXXXXXXXXLPIPSGKSFRDIKEKLC 611
GV+H VP+YE L H + RL + ++ R++KEKLC
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLC 217
Query: 612 YVALDFEQEMGNAAFQQFPSRSLRIPDGXVIHYRKRKXPLPXXXXXNLVLCMEAFGIHET 791
YV+ D E + + R+ +PDG VI + P ++ E G+ E
Sbjct: 218 YVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEF 277
Query: 792 TXNSIMXCEVXFVKDLY 842
++I +V K LY
Sbjct: 278 IFDTIQAADVDIRKYLY 294
Score = 84.6 bits (200), Expect = 2e-17
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
Frame = +1
Query: 4 GMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE 177
G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R +L +KYP+E
Sbjct: 13 GFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRSLLQVKYPME 72
Query: 178 HGIVTNWDDMEKIWHHTFYNELRVAPR 258
+GI+ ++++M ++W +TF+ +L++ PR
Sbjct: 73 NGIIRDFEEMNQLWDYTFFEKLKIDPR 99
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 102 bits (244), Expect = 7e-23
Identities = 61/154 (39%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Frame = +3
Query: 246 CRPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------- 404
C PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS +
Sbjct: 119 CEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRS 178
Query: 405 -TGIVLDSGDGVSHTVPIYEGYALPHAILRLXLXXXXXXXXXXXXXXXXXXXXLPIPSGK 581
TG V+DSGDGV+H +P+ EGY + +I + L P S K
Sbjct: 179 LTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNE---PDSSLK 235
Query: 582 SFRDIKEKLCYVALDFEQEMGNAAFQQFPSRSLR 683
+ IKE+ CYV D +E + F + P R L+
Sbjct: 236 TAERIKEECCYVCPDIVKEF--SRFDREPDRYLK 267
Score = 52.8 bits (121), Expect = 6e-08
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 24/110 (21%)
Frame = +1
Query: 4 GMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK--------------D 114
G K G+AG+DAP VFP+++ R G G M K D
Sbjct: 15 GYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLD 73
Query: 115 SYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPRN 261
++G++A K +L YPI HG + NWD ME+ W + + LR P +
Sbjct: 74 FFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPED 123
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.1 bits (149), Expect = 2e-11
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = +3
Query: 213 DLASY-LLQ*AACRPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 389
DL Y L Q P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +
Sbjct: 82 DLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAF 141
Query: 390 ASGRTTGIVLDSGDGVSHTVPIYEGYAL 473
ASG+ T ++D G S IY+G+ L
Sbjct: 142 ASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +1
Query: 13 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 192
+ GF+G+D P+ V PS G + G + Y+ +S G + +K I +G V
Sbjct: 24 RIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVE 75
Query: 193 NWDDMEKIWHHTFYNELRVAP 255
NWD +W + +L+ P
Sbjct: 76 NWDVTVDLWRYGLEQQLKTNP 96
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.1 bits (139), Expect = 4e-10
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +3
Query: 258 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGD 431
EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 432 GVSHTVPIYEG 464
SH +P+ G
Sbjct: 175 AASHVIPVLNG 185
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 13 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIV 189
+AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ + P E ++
Sbjct: 37 RAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVI 92
Query: 190 TNWDDMEKIWHHTF 231
+NWD ME++ +TF
Sbjct: 93 SNWDLMEQVLDYTF 106
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 55.6 bits (128), Expect = 8e-09
Identities = 23/83 (27%), Positives = 47/83 (56%)
Frame = +3
Query: 252 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 431
P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 99 PTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGS 158
Query: 432 GVSHTVPIYEGYALPHAILRLXL 500
+ P+ +G + I + L
Sbjct: 159 DNASVTPVVDGLIIRKGIFKQSL 181
Score = 36.7 bits (81), Expect = 0.004
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +1
Query: 4 GMC--KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYP 171
G C + G+AG+++P + PS + GV + ++ YV DE Q I + +K
Sbjct: 18 GSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNG 71
Query: 172 IEHGIVTNWDDMEKIWHHTFYNELRVAP 255
+GI+ +W+ W +L+V P
Sbjct: 72 KSNGIIQDWESTLYTWERGLKEKLQVNP 99
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +3
Query: 261 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 440
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 441 HTVPIYEGYALPHAILRLXL 500
PI +G + A +L L
Sbjct: 207 DITPILDGQIIFTATQQLPL 226
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 169 PIEHGIVTNWDDMEKIWHHTFYNELRVAPRNT 264
PI+ G V +W+ ++ W H Y+ L P +T
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDT 143
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.090
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 352 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 486
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 349 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 486
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 349 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 486
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +1
Query: 349 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWX*PVGPHRL 522
PP +PS +P VPPV P+ P P PS P PS P L
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 523 P 525
P
Sbjct: 1227 P 1227
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 28 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 171
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.36
Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Frame = +1
Query: 349 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTKDTHSPTPSCVWX*PVGP- 513
PP PS P P +PP + P + P P P P+ PV
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 514 HRLPHEDPHRARLLVHYQFRAGNRFVTSRRSCATSLLTSSR 636
LP +D RA L+ + G + SR+ A+ + S++
Sbjct: 492 AELPQQD-GRANLMASIRASGGMDLLKSRKVSASPSVASTK 531
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 328 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 486
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 328 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 486
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 340 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 486
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.64
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 373 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 477
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 136 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 47
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/77 (20%), Positives = 33/77 (42%)
Frame = +3
Query: 411 IVLDSGDGVSHTVPIYEGYALPHAILRLXLXXXXXXXXXXXXXXXXXXXXLPIPSGKSFR 590
+V+DSG +H +P+ + A+ R+ + +
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVN 216
Query: 591 DIKEKLCYVALDFEQEM 641
+IKE +CYV+ +F+++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 373 PCSRCTRPVVPPVSCWTPATVSPTPCPST 459
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/89 (17%), Positives = 41/89 (46%)
Frame = +3
Query: 228 LLQ*AACRPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 407
LLQ + ++ V+ L + EK+ I+F + + +++ + + +G +
Sbjct: 233 LLQIPVSQLSQYSVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSA 292
Query: 408 GIVLDSGDGVSHTVPIYEGYALPHAILRL 494
V+D G + + EG +P++ +++
Sbjct: 293 ACVVDMGAQKTSISCVEEGVVVPNSRIKI 321
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 349 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 456
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 128 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 12
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 270 LLTEAPLNPKANREKMTQIMFETFN 344
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 437 LPHRAHLRRIRTPPRHPASGLSRSDLTDYL 526
LPH + + +TP + P S L R + YL
Sbjct: 376 LPHNKKIDKSQTPAKFPTSVLLRQPIDTYL 405
>SPAC824.06 |tim14||TIM23 translocase complex subunit
Tim14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 529 EDPHRARLLVHYQFRAGNRFVTSRRSCATSLLTSSR 636
++ HR +L ++ R G+ +V S+ + A SLL + R
Sbjct: 69 KEAHRRLMLANHPDRGGSPYVASKVNEAKSLLDADR 104
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 165 FEGQDTSFALCLISYIRVLLSHTDHHA 85
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 103 GQKDSYVGDEAQSKRGILTLK-YPIEHGIVTNWDDM-EKIWHHTFYNELRVAPRNTQSCS 276
G +SY G A +GIL + + + +W ++ EKI H N L VAP T S S
Sbjct: 550 GTYESYEGSPAS--QGILQYDMWNVNPTDLWDWAELKEKIAKHGIRNSLLVAPMPTASTS 607
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,667,135
Number of Sequences: 5004
Number of extensions: 79780
Number of successful extensions: 299
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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