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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0642
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   3.2  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   5.6  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    23   7.5  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    23   9.9  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    23   9.9  

>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 202 DEMILTSRCSYFRLREASFLSLFTQTERTLN 110
           DE++    C YF     +F   + +T R LN
Sbjct: 335 DEILWAKTCMYFTRGSLTFAEAYKRTGRILN 365


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 185 SQDHLILILSHRETCDRPASFICMVLISNHVIV 283
           SQD L+  L   E   +P  F C   I  H+ +
Sbjct: 43  SQDSLVSKLKGNEAFYKPFLFCCAKKIERHIYI 75


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 167 EVGAS*SQDHLILILSHRETCDRPASFICMVLISNHVIV 283
           +VG    +D  +  +  R    +P +FIC +L S  VI+
Sbjct: 135 DVGVEIDEDLFLKEVEQRFLQSKPRAFICDILSSMPVIL 173


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 176 LLLPPARSVFLILVYADRANPKRIHVGAGT*LRQLLA 66
           LL  P+   F  +VYA+  NP+++     T +RQ+L+
Sbjct: 59  LLENPSSYPFSEIVYANIGNPQQMGQSPITFVRQVLS 95


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +3

Query: 3   NSAQQKQFIQTAANTITHKLLSEQLSQLCTCTYVDPFRVR 122
           N+  Q + +Q AAN ++    S  +   CT  Y   F  R
Sbjct: 218 NADHQLELLQQAANMMSESRFSLLVVDSCTALYRTDFSGR 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,887
Number of Sequences: 5004
Number of extensions: 14809
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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