Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0642
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0841 + 23579344-23579394,23579522-23579584,23579717-235798...    25   8.6  
03_04_0164 - 17893385-17893541,17893816-17893888,17894453-178946...    25   8.6  

>12_02_0841 +
           23579344-23579394,23579522-23579584,23579717-23579826,
           23580220-23580320,23580816-23580877,23580972-23581112,
           23581388-23581523,23582257-23582284,23582665-23582728,
           23582924-23583044,23583565-23583623,23583716-23583784,
           23583875-23584015,23584130-23584194,23584345-23584441,
           23584803-23584862,23585409-23585561,23586022-23586088,
           23586174-23586284,23586689-23586799,23587370-23587567,
           23587679-23587860
          Length = 729

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 197 DDLDFTMLLLPPARSVFLI----LVYADRANPKRI 105
           DD+D+ ML +PP  S  +I         R NP+RI
Sbjct: 203 DDIDWNMLAVPPTGSYKVINANDQYLTGRGNPQRI 237


>03_04_0164 -
           17893385-17893541,17893816-17893888,17894453-17894612,
           17894724-17894835,17895241-17895338,17895789-17896209,
           17896398-17896549,17896914-17897122,17898000-17898087,
           17899448-17899708
          Length = 576

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 134 YADRANPKRIHVGAGT*LRQLLAEELVRDGVG 39
           Y      +R+H+  GT    LL E   RDGVG
Sbjct: 374 YVCNGGVQRVHIIDGTVGGSLLLELFTRDGVG 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,043,652
Number of Sequences: 37544
Number of extensions: 110765
Number of successful extensions: 168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)