Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0642
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_38759| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          25   8.9  

>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 303  LIYFFIITMTWLLINTIHM 247
            L YFF    TW+L+  +HM
Sbjct: 2532 LHYFFSTVFTWMLVEGVHM 2550


>SB_38759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 169 SRSIVKSRSSHLNIITP*DVRPSRLVHMYGINK*PR-HSNNKKIY 300
           S++IVK+  ++   +TP D+RP   +  YG    PR H+   ++Y
Sbjct: 341 SKAIVKTIMTNDRAVTPNDLRPGDHIVRYGNPLHPRCHAIVIRVY 385


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  PTWIRLGFALSA*TRIRKTLRAGGSRSI 180
           P+WIR   A    T + KTL AG +R +
Sbjct: 113 PSWIRESTAFLFFTWMNKTLNAGNTRRL 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,974,911
Number of Sequences: 59808
Number of extensions: 124620
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)